Publication list - NaCTeM Publications

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Chun, H.-W., Tsuruoka, Y., Kim, J.-D., Shiba, R., Nagata, N., Hishiki, T. and Tsujii, J., Extraction of Gene-Disease Relations from MedLine using Domain Dictionaries and Machine Learning, in: Proceedings of the Pacific Symposium on Biocomputing (PSB) 11, pages 4-15, 2006

Ninomiya, T., Matsuzaki, T., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Extremely Lexicalized Models for Accurate and Fast HPSG Parsing, in: Proceedings of EMNLP 2006, pages 155--163, 2006

Okanohara, D., Miyao, Y., Tsuruoka, Y. and Tsujii, J., Improving the Scalability of Semi-Markov Conditional Random Fields for Named Entity Recognition, in: Proceedings of ACL 2006, 2006

Ananiadou, S. and McNaught, J., Introduction to Text Mining in Biology, in: Text Mining for Biology and Biomedicine, pages 1--12, Artech House, Inc., 2006

Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. and Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), pages 1402--1405, 2006

NenadiÄ‡, G. and Ananiadou, S., Mining Semantically Related Terms from Biomedical Literature (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(22--43)

Kim, J.-D., Ananiadou, S. and Tsujii, J., Ontology based Semantic Annotation for Knowledge Extraction, in: 2nd International Digital Curation Conference, 2006

Second International Symposium on Semantic Mining in Biomedicine (SMBM), 2006

[URL]

Miyao, Y., Ohta, T., Masuda, K., Tsuruoka, Y., Yoshida, K., Ninomiya, T. and Tsujii, J., Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive Textbases, in: Proceedings of COLING-ACL 2006, pages 1017--1024, 2006

Mima, H., Ananiadou, S. and Matsushima, K., Terminology-Based Knowledge Mining for New Knowledge Discovery (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(74--88)

Ananiadou, S., Kell, D. B. and Tsujii, J., Text mining and its potential applications in systems biology (2006), in: Trends in Biotechnology, 24:12(571 - 579)

Text Mining for Biology And Biomedicine, Artech House, Inc., 2006

[URL]

Unno, Y., Ninomiya, T., Miyao, Y. and Tsujii, J., Trimming CFG Parse Trees for Sentence Compression Using Machine Learning Approaches, in: Proceedings of the COLING/ACL 2006 Main Conference Poster Sessions, pages 850--857, Association for Computational Linguistics, 2006

SpasiÄ‡, I. and Ananiadou, S., A flexible measure of contextual similarity for biomedical terms., in: Proceedings of the Pacific Symposium on Biocomputing 10, pages 197--208, 2005

Tsuruoka, Y., Ananiadou, S. and Tsujii, J., A Machine Learning Approach To Acronym Generation, in: Proceedings of the Workshop On Linking Biological Literature Ontologies And Databases: Mining Biological Semantics (BioLink 2005), pages 25-31, 2005

Ninomiya, T., Miyao, Y. and Tsujii, J., A Persistent Feature-Object Database for Intelligent Text Archive Systems, in: Natural Language Processing - IJCNLP 2004, pages 197--205, Springer-Verlag, 2005

Hara, T., Miyao, Y. and Tsujii, J., Adapting a probabilistic disambiguation model of an HPSG parser to a new domain, in: Natural Language Processing â€“ IJCNLP 2005, pages 199--210, Springer-Verlag, 2005

Okanohara, D. and Tsujii, J., Assigning Polarity Scores to Reviews Using Machine Learning Techniques, in: Natural Language Processing - IJCNLP 2005, Springer-Verlag, 2005

Tsuruoka, Y. and Tsujii, J., Bidirectional inference with the easiest-first strategy for tagging sequence data, in: HLT '05: Proceedings of the conference on Human Language Technology and Empirical Methods in Natural Language Processing, Vancouver, British Columbia, Canada, pages 467--474, Association for Computational Linguistics, 2005

Yakushiji, A., Miyao, Y., Tateisi, Y. and Tsujii, J., Biomedical Information Extraction with Predicate-Argument Structure Patterns, in: Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM), pages 60--69, 2005

Tsuruoka, Y. and Tsujii, J., Chunk Parsing Revisited, in: Proceedings of the 9th International Workshop on Parsing Technologies (IWPT 2005), pages 133--140, 2005

Tsuruoka, Y., Tateisi, Y., Kim, J.-D., Ohta, T., McNaught, J., Ananiadou, S. and Tsujii, J., Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, pages 382--392, Springer-Verlag, 2005

Ninomiya, T., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Efficacy of Beam Thresholding, Unification Filtering and Hybrid Parsing in Probabilistic HPSG Parsing, in: Proceedings of IWPT 2005, pages 103--114, 2005

Tsuruoka, Y. and Tsujii, J., Iterative CKY Parsing for Probabilistic Context-Free Grammars, in: Natural Language Processing - IJCNLP 2004, pages 52-60, Springer-Verlag, 2005

SpasiÄ‡, I., Ananiadou, S. and Tsujii, J., MaSTerClass: a case-based reasoning system for the classification of biomedical terms (2005), in: Bioinformatics, 21:11(2748--2758)

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