Publication list - NaCTeM Publications

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Rak, R., Batista-Navarro, R., Carter, J., Rowley, A. and Ananiadou, S., Processing Biological Literature with Customisable Web Services Supporting Interoperable Formats (2014), in: Database: The Journal of Biological Databases and Curation

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Miwa, M., Thomas, J., O'Mara-Eves, A. and Ananiadou, S., Reducing systematic review workload through certainty-based screening (2014), in: Journal of Biomedical Informatics

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MihÄƒilÄƒ, C. and Ananiadou, S., Semi-supervised learning of causal relations in biomedical scientific discourse (2014), in: BioMedical Engineering OnLine, 13:Suppl 2(S1)

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Williams, J., Matragkas, N., Kolovos, D. S., Korkontzelos, I., Ananiadou, S. and Paige, R. F., Software Analytics for MDE Communities, in: Proceedings of the Open Source Software for Model Driven Engineering Workshop (OSS4MDEâ€™14), 2014

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Korkontzelos, I. and Ananiadou, S., Term Extraction (2014), in: Oxford Handbook of Computational Linguistics (2nd Ed.)

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. and Ananiadou, S., Text Mining-assisted Biocuration Workflows in Argo (2014), in: Database: The Journal of Biological Databases and Curation

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MihÄƒilÄƒ, C. and Ananiadou, S., The Meta-knowledge of Causality in Biomedical Scientific Discourse, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, pages 1984-1991, European Language Resources Association (ELRA), 2014

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Rehm, G., Uszkoreit, H., Ananiadou, S., Bel, N., Bieleviciene, A., Borin, L., Branco, A., Budin, G., Calzolari, N., Daelemans, W., Garabik, R., Grobelnik, M., Garcia-Mateo, C., Van Genabith, J., Hajic, J., Hernaez, I., Judge, J., Koeva, S., Krek, S., Krstev, C., Linden, K., Magnini, B., Mariani, J., McNaught, J., Melero, M., Monachini, M., Moreno, A., Odijk, J., Ogrodniczuk, M., Pezik, P., Piperidis, S., Przepiorkowski, A., Rognvaldsson, E., Rosner, M., Pedersen, B., Skadina, I., De Smedt, K., Tadic, M., Thompson, P., Tufis, D., Varadi, T., Vasiljevs, A., Vider, K. and Zabarskaite, J., The Strategic Impact of META-NET on the Regional, National and International Level, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), pages 1517-1524, European Language Resources Association, 2014

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Kontonatsios, G., Korkontzelos, I., Tsujii, J. and Ananiadou, S., Using a Random Forest Classifier to Compile Bilingual Dictionaries of Technical Terms from Comparable Corpora, in: Proceedings of the 14th Conference of the European Chapter of the Association for Computational Linguistics, volume 2: Short Papers, Association for Computational Linguistics, Gothenburg, Sweden, pages 111-116, Association for Computational Linguistics, 2014

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MihÄƒilÄƒ, C. and Ananiadou, S., A Hybrid Approach to Recognising Discourse Causality in the Biomedical Domain, in: Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2013, Shanghai, China, pages 361-366, IEEE, 2013

Restificar, A., Korkontzelos, I. and Ananiadou, S., A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data (2013), in: BMC Medical Informatics and Decision Making, 13:Suppl 1(S6)

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Miwa, M., Ohta, T., Rak, R., Rowley, A., Kell, D. B., Pyysalo, S. and Ananiadou, S., A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text (2013), in: Bioinformatics, 29:13(i44-i52)

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Alhazmi, S., Black, W.J. and McNaught, J., Arabic SentiWordNet in Relation to SentiWordNet 3.0 (2013), in: International Journal of Computational Linguistics, 4:1(1-11)

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MihÄƒilÄƒ, C., Ohta, T., Pyysalo, S. and Ananiadou, S., BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2)

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Batista-Navarro, R., Rak, R. and Ananiadou, S., Chemistry-specific Features and Heuristics for Developing a CRF-based Chemical Named Entity Recogniser, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, pages 55-59, 2013

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. and Ananiadou, S., Customisable Curation Workflows in Argo, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, pages 270-278, 2013

Piliouras, D., Korkontzelos, I., Dowsey, A. and Ananiadou, S., Dealing with data sparsity in Drug Named Entity Recognition, in: Proceedings of IEEE International Conference on Healthcare Informatics, Philadelhia, PA, pages 14-21, 2013

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Kontonatsios, G., Korkontzelos, I., Kolluru, B., Thompson, P. and Ananiadou, S., Deploying and Sharing U-Compare Workflows as Web Services (2013), in: Journal of Biomedical Semantics, 4(7)

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Rak, R., Rowley, A., Carter, J. and Ananiadou, S., Development and Analysis of NLP Pipelines in Argo, in: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics: System Demonstrations, Association for Computational Linguistics, Sofia, Bulgaria, pages 115-120, 2013

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Pyysalo, S., Ginter, F., Moen, H., Salakoski, T. and Ananiadou, S., Distributional Semantics Resources for Biomedical Text Processing, in: Proceedings of LBM 2013, pages 39-44, 2013

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Ananiadou, S., Thompson, P. and Nawaz, R., Enhancing Search: Events and their Discourse Context, in: Computational Linguistics and Intelligent Text Processing, pages 318-334, Springer, 2013

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Kontonatsios, G., Thompson, P., Batista-Navarro, R., MihÄƒilÄƒ, C., Korkontzelos, I. and Ananiadou, S., Extending an interoperable platform to facilitate the creation of multilingual and multimodal NLP applications, in: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics: System Demonstrations, Association for Computational Linguistics, Sofia, Bulgaria, pages 43-48, 2013

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Batista-Navarro, R., Kontonatsios, G., MihÄƒilÄƒ, C., Thompson, P., Rak, R., Nawaz, R., Korkontzelos, I. and Ananiadou, S., Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform, in: Computational Linguistics and Intelligent Text Processing, pages 559-571, Springer Berlin Heidelberg, 2013

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Van Landeghem, S., BjÃ¶rne, J., Wei, C-. H, Hakala, K., Pyysalo, S., Ananiadou, S., Kao, H. -Y., Lu, Z., Salakoski, T., Van de Peer, Y. and Ginter, F., Large-scale event extraction from literature with multi-level gene normalization (2013), in: PLOS ONE, 8:4(e55814)

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