Publication list - NaCTeM Publications

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Thew, S., Sutcliffe, A., Procter, R., de Bruijn, O., McNaught, J., Venters, C.C. and Buchan, I., Requirements Engineering for E-science: Experiences in Epidemiology (2009), in: IEEE Software, 26:1(80-87)

Sun, X., Okazaki, N. and Tsujii, J., Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global Information, in: Proceedings of ACL-IJCNLP 2009, pages 905--913, 2009

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Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. and Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), pages 34--48, 2009

Wu, X., Okazaki, N. and Tsujii, J., Semi-Supervised Lexicon Mining from Parenthetical Expressions in Monolingual Web Pages, in: Proceedings of HLT-NAACL 2009, pages 424--432, 2009

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Piao, S., Tsuruoka, Y. and Ananiadou, S., Sentiment Analysis with Knowledge Resource and NLP Tools (2009), in: The International Journal of Interdisciplinary Social Sciences, 4:5(17--28)

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Sun, X. and Tsujii, J., Sequential Labeling with Latent Variables: An Exact Inference Algorithm and An Efficient Approximation, in: Proceedings of EACL 2009, pages 772-780, 2009

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Pyysalo, S., Ohta, T., Kim, J.-D. and Tsujii, J., Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, pages 1--9, 2009

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Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty, in: ACL-IJCNLP 2009, pages 477--485, 2009

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Miyao, Y. and Tsujii, J., Supervised Learning of a Probabilistic Lexicon of Verb Semantic Classes, in: Proceedings of EMNLP 2009, pages 1328--1337, 2009

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Ananiadou, S., Weissenbacher, D., Rea, B., Pieri, E., Lin, Y., Vis, F., Procter, R. and Halfpenny, P., Supporting Frame Analysis using Text Mining, in: Proceedings of the 5th International Conference on e-Social Science, 2009

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Ananiadou, S., Okazaki, N., Procter, R., Rea, B. and Thomas, J., Supporting Systematic Reviews using Text Mining (2009), in: Social Science Computer Review, 27:4(509-523)

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Okanohara, D. and Tsujii, J., Text Categorization with All Substring Features, in: SIAM International Conference on Data Mining (SDM), 2009

Ananiadou, S., Text Mining for Biomedicine (2009), in: Information Retrieval in Biomedicine: Natural Language Processing for Knowledge Integration(1--11)

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Wu, X., Matsuzaki, T., Okazaki, N., Miyao, Y. and Tsujii, J., The UOT System: Improve String-to-Tree Translation Using Head-Driven Phrase Structure Grammar and Predicate-Argument Structures, in: Proceedings on the International Workshop on Spoken Language Translation (IWSLT), pages 99--106, 2009

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Sasaki, Y., McNaught, J. and Ananiadou, S., The Value of an In-Domain Lexicon in Genomics QA, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), pages 47--55, 2009

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Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Three BioNLP Tools Powered by the BioLexicon, in: Proceeedings of EACL 2009 Demonstration Session, pages 61--64, 2009

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Kano, Y., Baumgartner Jr., W. A, McCrochon, L., Ananiadou, S., Cohen, K. B., Hunter, L. and Tsujii, J., U-Compare: share and compare text mining tools with UIMA (2009), in: Bioinfomatics, 25:15(1997--1998)

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Lyte, V., Jones, S., Ananiadou, S. and Kerr, L., UK Institutional Repository Search: Innovation and Discovery (2009), in: Ariadne, 61

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Okazaki, N., Ishizuka, M. and Tsujii, J., A Discriminative Approach to Japanese Abbreviation Extraction, in: Proceedings of the Third International Joint Conference on Natural Language Processing (2008), pages 889-894, 2008

Okazaki, N., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., A Discriminative Candidate Generator for String Transformations, in: Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing (EMNLP 2008), pages 447-456, 2008

Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Accelerating the annotation of sparse named entities by dynamic sentence selection (2008), in: BMC Bioinformatics, 9:Suppl 11(S8)

Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection, in: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008), pages 30--37, Association for Computational Linguistics, 2008

Tsunakawa, T. and Tsujii, J., Bilingual Synonym Identification with Spelling Variations, in: Proceedings of the 3rd international Joint Conference on Natural Language Processing, pages 457--464, 2008

Sasaki, Y., Montemagni, S., Pezik, P., Rebholz-Schuhmann, D., McNaught, J. and Ananiadou, S., BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, pages 109--116, Turku Centre for Computer Science (TUCS), 2008

Rebholz-Schuhmann, D., Pezik, P., Lee, V., Kim, J-J., del Gratta, R., Sasaki, Y., McNaught, J., Montemagni, S., Monachini, M., Calzolari, N. and Ananiadou, S., BioLexicon: Towards a Reference Terminological Resource in the Biomedical Domain, in: Proceedings of the of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB-2008), 2008

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