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Publications of Miwa, M.
In Press
| , , , , , , , , and , ELAINE-medLLM: Lightweight English Japanese Chinese Trilingual Large Language Model for Bio-medical Domain, in: Proceedings of the 31st International Conference on Computational Linguistics (COLING 2025), In Press |
2024
| , and , IRIS: Iterative Improvement of Distantly Supervised Named Entity Annotations, Research Square, 2024 |
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2023
| , , , and , Contextualized Medication Event Extraction with Levitated Markers (2023), in: Journal of Biomedical Informatics(104347) |
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| and , DISTANT: Distantly Supervised Entity Span Detection and Classification, in: Proceedings of BioNLP 2023, pages 171–177, 2023 |
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| , and , Span-based Named Entity Recognition by Generating and Compressing Information, in: Proceedings of EACL 2023, pages 1984–1996, 2023 |
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2022
| , and , BioVAE: a pre-trained latent variable language model for biomedical text mining (2022), 38:3(872-874) |
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| , , , , and , Comparing neural models for nested and overlapping biomedical event detection (2022), in: BMC Bioinformatics, 23(211) |
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| , , and , Learning Disentangled Representations of Negation and Uncertainty, in: Proceedings of ACL 2022, pages 8380–8397, 2022 |
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| , and , Named Entity Recognition for Cancer Immunology Research Using Distant Supervision, in: Proceedings of BioNLP 2022, pages 171-177, 2022 |
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2021
| , and , Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors, in: Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics - Human Language Technologies (NAACL-HLT), pages 11-26, 2021 |
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2020
| , , , , and , DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts (2020), in: Bioinformatics(btaa540) |
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| , and , Syntactically-Informed Word Representations from Graph Neural Network (2020), in: Neurocomputing, 413(431-443) |
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2019
| , and , A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection, in: Proceedings of EMNLP 2019, pages 3670-3677, 2019 |
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| , , , and , Adverse Drug Events and Medication Relation Extraction in EHRs with Ensemble Deep Learning Methods (2019), in: Journal of the American Medical Informatics Association(ocz101) |
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| , , and , An Ensemble of Neural Models for Nested Adverse Drug Events and Medication Extraction with Subwords (2019), in: Journal of the American Medical Informatics Association, 27:1(22-30) |
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| , and , Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs, in: Proceedings of EMNLP 2019, pages 4927-4938, 2019 |
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| , , , , and , Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering, in: Proceedings of the 5th Workshop on BioNLP Open Shared Tasks, pages 196-205, 2019 |
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| , , and , Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network, in: Proceedings of ACL 2019, pages 4309-4316, 2019 |
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2018
| , and , A Neural Layered Model for Nested Named Entity Recognition, in: Proceedings of NAACL 2018, pages 1446-1459, 2018 |
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| , and , A Walk-based Model on Entity Graphs for Relation Extraction, in: Proceedings of ACL, pages 81-88, 2018 |
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| , , and , Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts, in: Proceedings of the BioNLP 2018 workshop, pages 183-188, 2018 |
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2016
| , , and , Ensemble Classification of Grants using LDA-based features (2016), in: Proceedings of LREC 2016(1288-1294) |
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| , , , and , Text Mining for Semantic Search in Europe PubMed Central Labs, in: Working with Text: Tools, Techniques and Approaches for Text Mining, pages 111-132, Elsevier, 2016 |
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| , , and , Topic Detection Using Paragraph Vectors to Support Active Learning in Systematic Reviews (2016), in: Journal of Biomedical Informatics, 62(59–65) |
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2015
| and , Adaptable, high recall, event extraction system with minimal configuration (2015), in: BMC Bioinformatics, 16:Suppl 10.(S7) |
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