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Tsuruoka, Y. en Tsujii, J., Bidirectional inference with the easiest-first strategy for tagging sequence data, in: HLT '05: Proceedings of the conference on Human Language Technology and Empirical Methods in Natural Language Processing, Vancouver, British Columbia, Canada, pagina's 467--474, Association for Computational Linguistics, 2005

Yakushiji, A., Miyao, Y., Tateisi, Y. en Tsujii, J., Biomedical Information Extraction with Predicate-Argument Structure Patterns, in: Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM), pagina's 60--69, 2005

Tsuruoka, Y. en Tsujii, J., Chunk Parsing Revisited, in: Proceedings of the 9th International Workshop on Parsing Technologies (IWPT 2005), pagina's 133--140, 2005

Tsuruoka, Y., Tateisi, Y., Kim, J.-D., Ohta, T., McNaught, J., Ananiadou, S. en Tsujii, J., Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, pagina's 382--392, Springer-Verlag, 2005

Ninomiya, T., Tsuruoka, Y., Miyao, Y. en Tsujii, J., Efficacy of Beam Thresholding, Unification Filtering and Hybrid Parsing in Probabilistic HPSG Parsing, in: Proceedings of IWPT 2005, pagina's 103--114, 2005

Tsuruoka, Y. en Tsujii, J., Iterative CKY Parsing for Probabilistic Context-Free Grammars, in: Natural Language Processing - IJCNLP 2004, pagina's 52-60, Springer-Verlag, 2005

SpasiÄ‡, I., Ananiadou, S. en Tsujii, J., MaSTerClass: a case-based reasoning system for the classification of biomedical terms (2005), in: Bioinformatics, 21:11(2748--2758)

Kazama, J. en Tsujii, J., Maximum Entropy Models with Inequality Constraints: A case study on text categorization (2005), in: Machine Learning, 60:1-3(169-194)

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NenadiÄ‡, G., SpasiÄ‡, I. en Ananiadou, S., Mining Biomedical Abstracts: Whatâ€™s in a Term?, in: Natural Language Processing â€“ IJCNLP 2004, Springer-Verlag, 2005

Rice, S., NenadiÄ‡, G. en Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

Matsuzaki, T., Miyao, Y. en Tsujii, J., Probabilistic CFG with Latent Annotations, in: Proceedings of ACL 2005, pagina's 75--82, 2005

Miyao, Y. en Tsujii, J., Probabilistic disambiguation models for wide-coverage HPSG parsing, in: Proceedings of ACL 2005, pagina's 83--90, 2005

SpasiÄ‡, I., Ananiadou, S., McNaught, J. en Kumar, A., Text mining and ontologies in biomedicine: making sense of raw text. (2005), in: Briefings in Bioinformatics, 6:3(239--251)

Ananiadou, S., Chruszcz, J., Keane, J., McNaught, J. en Watry, P., The National Centre for Text Mining: Aims and Objectives (2005), in: Ariadne, 42

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Tsujii, J. en Ananiadou, S., Thesaurus or Logical Ontology, Which One Do We Need for Text Mining? (2005), in: Language Resources and Evaluation, 39:1(77-90)

Nakanishi, H., Miyao, Y. en Tsujii, J., An Empirical Investigation of the Effect of Lexical Rules on Parsing with a Treebank Grammar, in: Proceedings of The Third Workshop on Treebanks and Lingustic Theories (TLT 2004), pagina's 103--114, 2004

NenadiÄ‡, G., SpasiÄ‡, I. en Ananiadou, S., Automatic Discovery of Term Similarities Using Pattern Mining (2004), in: International Journal of Terminology, 10:1(55-80)

Chun, H.-W., Ohta, T., Kim, J.-D. en Tsujii, J., Building Patterns for Biomedical Event Extraction, in: Proceedings of the 15th International conference on Genome Informatics (GIW), pagina's 163--164, 2004

Miyao, Y. en Tsujii, J., Deep Linguistic Analysis for the Accurate Identification of Predicate-Argument Relations, in: Proceedings of COLING 2004, pagina's 1392-1397, 2004

NenadiÄ‡, G., Ananiadou, S. en McNaught, J., Enhancing automatic term recognition through recognition of variation, in: Proceedings of COLING 2004, pagina's 604--610, Association for Computational Linguistics, 2004

Tsuruoka, Y. en Tsujii, J., Improving the Performance of Dictionary-based Approaches in Protein Name Recognition (2004), in: Journal of Biomedical Informatics, 37:6(461-470)

Kim, J.-D., Ohta, T., Tsuruoka, Y., Tateisi, Y. en Collier, N., Introduction to the Bio-Entity Recognition Task at JNLPBA, in: Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA-04), pagina's 70--75, 2004

Ananiadou, S., Friedman, C. en Tsujii, J., Introduction: named entity recognition in biomedicine (2004), in: Journal of Biomedical Informatics, 37:6(393--395)

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SpasiÄ‡, I., NenadiÄ‡, G. en Ananiadou, S., Learning to Classify Biomedical Terms through Literature Mining and Genetic Algorithms, in: Intelligent Data Engineering and Automated Learning â€“ IDEAL 2004, pagina's 345--351, Springer-Verlag, 2004

Tateisi, Y. en Tsujii, J., Part-of-Speech Annotation of Biology Research Abstracts, in: Proceedings of 4th International Conference on Language Resources and Evaluation (LREC 2004), pagina's 1267-1270, 2004

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