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Kim, J.-D., Ananiadou, S. and Tsujii, J., Ontology based Semantic Annotation for Knowledge Extraction, in: 2nd International Digital Curation Conference, 2006
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Ananiadou, S. and Nenadić, G., Automatic Terminology Management in Biomedicine, in: Text Mining for Biology and Biomedicine, pages 67--98, Artech House, Inc., 2006
Ananiadou, S. and McNaught, J., Introduction to Text Mining in Biology, in: Text Mining for Biology and Biomedicine, pages 1--12, Artech House, Inc., 2006
Text Mining for Biology And Biomedicine, Artech House, Inc., 2006
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Yoshida, K. and Tsujii, J., Reranking for Biomedical Named-Entity Recognition, in: Proceedings of BioNLP 2007: Biological, translational, and clinical language processing, pages 209--216, 2007
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Yoshida, K., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Ambiguous Part-of-Speech Tagging for Improving Accuracy and Domain Portability of Syntactic Parsers, in: Proceedings of the Twentieth International Joint Conference on Artificial Intelligence (IJCAI-07), pages 1783-1788, 2007
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Sasaki, Y., Rea, B. and Ananiadou, S., Multi-topic Aspects in Clinical Text Classification, in: BIBM '07: Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine, pages 62--70, IEEE Computer Society, 2007
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Sagae, K. and Tsujii, J., Dependency parsing and domain adaptation with LR models and parser ensembles, in: Proceedings of the CoNLL 2007 Shared Task in the Joint Conferences on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL'07 shared task), pages 1044-1050, 2007
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Sagae, K., Miyao, Y. and Tsujii, J., HPSG parsing with shallow dependency constraints, in: Proceedings of the 44th Meeting of the Association for Computational Linguistics, pages 624--631, 2007
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Sætre, R., Sagae, K. and Tsujii, J., Syntactic features for protein-protein interaction extraction, in: Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), pages 6.1-6.14, CEUR Workshop Proceedings (CEUR-WS.org), 2008
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Rea, B. and Ananiadou, S., Text Mining Services to Support E-Research, in: UK e-Science All Hands Meeting, 2007
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Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. and McNaught, J., Mining Opinion Polarity Relations of Citations, in: Proceedings of the 7th International Workshop on Computational Semantics, pages 366-371, 2007
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Piao, S., Ananiadou, S. and McNaught, J., Integrating Annotation Tools into UIMA for Interoperability, in: Proceedings of the UK e-Science AHM Conference 2007, pages 575--582, 2007
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Okanohara, D. and Tsujii, J., A discriminative language model with pseudo-negative samples, in: Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics (ACL 2007), pages 73--80, Association for Computational Linguistics, 2007
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Ninomiya, T., Matsuzaki, T., Miyao, Y. and Tsujii, J., A log-linear model with an n-gram reference distribution for accurate HPSG parsing, in: Proceedings of the Tenth International Conference on Parsing Technologies (IWPT), Prague, Czech Republic, pages 60--68, 2007
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Miyao, Y., Sagae, K. and Tsujii, J., Towards Framework-Independent Evaluation of Deep Linguistic Parsers, in: Proceedings of Grammar Engineering across Frameworks (GEAF2007), pages 238--258, CSLI Publications, 2007
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Matsuzaki, T., Miyao, Y. and Tsujii, J., Efficient HPSG Parsing with Supertagging and CFG-filtering, in: Proceedings of the Twentieth International Joint Conference on Artificial Intelligence (IJCAI-07), pages 1671-1676, 2007
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Tam, W.L., Miyao, Y. and Tsujii, J., Framework independent summarized parser output and its documentation, in: Proceedings of grammar engineering across framework 2007 (GEAF07), pages 319--331, 2007
Hara, T., Miyao, Y. and Tsujii, J., Evaluating Impact of Re-training a Lexical Disambiguation Model on Domain Adaptation of an HPSG Parser, in: Proceedings of the Tenth International Conference on Parsing Technologies (IWPT 2007), pages 11--22, 2007
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Hahn, U., Buyko, E., Tomanek, K., Piao, S., McNaught, J., Tsuruoka, Y. and Ananiadou, S., An Annotation Type System for a Data-Driven NLP Pipeline, in: Proceedings of the Linguistic Annotation Workshop, pages 33--40, Association for Computational Linguistics, 2007
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Frantzi, K. and Ananiadou, S., C-value for Authorship Identification, in: Proceedings of the 8th Conference on Forensic Linguistics, Language and Law, International Association of Forensic Linguistics, 2007
Ananiadou, S., Cotter, P., Nobata, C., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y. and Tsujii, J., SemText: a semantically enriched information retrieval system for biology, in: Proceedings of the 8th International Conference on Systems Biology (ICSB 2007), 2007
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Araki, N., Yoshida, K., Tsuruoka, Y. and Tsujii, J., Move Prediction in Go with the Maximum Entropy Method, in: 2007 IEEE Symposium on Computational Intelligence and Games, pages 189-195, 2007
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