Publication list - NaCTeM Publications

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Inan, E., Thompson, P., Yates, T. and Ananiadou, S., HSEarch: semantic search system for workplace accident reports, in: Proceedings of the 43rd European Confererence on Information Retrieval (ECIR 2021), pages 514-519, 2021

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Hamulyak, E. N., Brockmeier, A. J., Killas, J. D., Ananiadou, S., Middeldorp, S. and Leroi, A. M., Women’s health in The BMJ: a data science history (2020), in: BMJ Open, 10(e039759)

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El Boukkouri, H, Ferret, O., Lavergne, T., Noji, H., Zweigenbaum, P. and Tsujii, J., CharacterBERT: Reconciling ELMo and BERT for Word-Level Open-Vocabulary Representations From Characters, in: Proceedings of the 28th International Conference on Computational Linguistics (COLING 2020), pages 6903–6915, 2020

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Li, M., Takamura, H. and Ananiadou, S., A Neural Model for Aggregating Coreference Annotation in Crowdsourcing, in: Proceedings of the 28th International Conference on Computational Linguistics (COLING 2020), pages 5760-5773, 2020

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Arase, Y. and Tsujii, J., Compositional Phrase Alignment and Beyond, in: Proceedings of EMNLP 2020, pages 1611–1623, 2020

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Tran, T. T., Miwa, M. and Ananiadou, S., Syntactically-Informed Word Representations from Graph Neural Network (2020), in: Neurocomputing, 413(431-443)

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Trieu, H-L., Tran, T. T., Duong, K. N. A., Nguyen, A., Miwa, M. and Ananiadou, S., DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts (2020), in: Bioinformatics(btaa540)

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Zerva, C., Nghiem, M-. Q., Nguyen, N. T. H. and Ananiadou, S., Cited text span identification for scientific summarisation using pre-trained encoders (2020), in: Scientometrics

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Tran, T. T., Le, P. and Ananiadou, S., Revisiting Unsupervised Relation Extraction, in: Proceedings of ACL 2020, pages 7498–7505, 2020

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Thompson, P., Yates, T., Inan, E. and Ananiadou, S., Semantic Annotation for Improved Safety in Construction Work, in: Proceedings of LREC 2020, pages 1983‑1992, 2020

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Lambert, B. C., Kontonatsios, G., Mauch, M., Kokkoris, T., Jockers, M., Ananiadou, S. and Leroi, A. M., The pace of modern culture (2020), in: Nature Human Behaviour

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Leroi, A. M., Lambert, B. C., Mauch, M., Papadopoulou, M., Ananiadou, S., Lindberg, S. I. I. and Lindenfors, P., On revolutions (2020), in: Palgrave Communications, 6(4)

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Brockmeier, A. J., Ju., M., Przybyɫa, P. and Ananiadou, S., Improving reference prioritisation with PICO recognition (2019), in: BMC Medical Informatics and Decision Making, 19(256)

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Trieu, H-L., Duong, K. N. A., Nguyen, N. T. H., Miwa, M., Takamura, H. and Ananiadou, S., Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering, in: Proceedings of the 5th Workshop on BioNLP Open Shared Tasks, pages 196-205, 2019

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Wang, Y., Fan, X., Chen, L., Chang, E. I-C., Ananiadou, S., Tsujii, J. and Xu, Y., Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries (2019), in: BMC Bioinformatics, 20(430)

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Espinosa, K., Miwa, M. and Ananiadou, S., A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection, in: Proceedings of EMNLP 2019, pages 3670-3677, 2019

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Christopoulou, F., Miwa, M. and Ananiadou, S., Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs, in: Proceedings of EMNLP 2019, pages 4927-4938, 2019

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Alhuzali, H. and Ananiadou, S., Improving classification of Adverse Drug Reactions through Using Sentiment Analysis and Transfer Learning, in: Proceedings of BioNLP, pages 339-347, 2019

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Christopoulou, F., Tran, T. T., Sahu, S. K., Miwa, M. and Ananiadou, S., Adverse Drug Events and Medication Relation Extraction in EHRs with Ensemble Deep Learning Methods (2019), in: Journal of the American Medical Informatics Association(ocz101)

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Ju., M., Nguyen, N. T. H., Miwa, M. and Ananiadou, S., An Ensemble of Neural Models for Nested Adverse Drug Events and Medication Extraction with Subwords (2019), in: Journal of the American Medical Informatics Association, 27:1(22-30)

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Sahu, S. K., Christopoulou, F., Miwa, M. and Ananiadou, S., Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network, in: Proceedings of ACL 2019, pages 4309-4316, 2019

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Ju., M., Short, A.D., Thompson, P., Bakerly, N. D., Gkoutos, G., Tsaprouni, L. and Ananiadou, S., Annotating and Detecting Phenotypic Information for Chronic Obstructive Pulmonary Disease (2019), in: JAMIA Open, 2:2(261-271)

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Li, M., Myrman, A. F., Mu, T. and Ananiadou, S., Modelling Instance-Level Annotator Reliability for Natural Language Labelling Tasks, in: Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 1 (Long and Short Papers), pages 2873-2883, 2019

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Iliopoulos, I., Ananiadou, S., Danchin, A., Ioannidis, J. P. A., Katsikis, P. D., Ouzounis, C. A. and Promponas, V. J., Point of View: Hypothesis, analysis and synthesis, it's all Greek to me (2019), in: eLife, 8(e43514)

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Bannach-Brown, A., Przybyɫa, P., Thomas, J., Rice, A., Ananiadou, S., Liao, J. and Macleod, M. R., Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error (2019), in: Systematic Reviews, 8(23)

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