Publication list - NaCTeM Publications

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Williams, J., Matragkas, N., Kolovos, D. S., Korkontzelos, I., Ananiadou, S. and Paige, R. F., Software Analytics for MDE Communities, in: Proceedings of the Open Source Software for Model Driven Engineering Workshop (OSS4MDEâ€™14), 2014

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Almeida, B., Ananiadou, S., Bagnato, A., Barbero, A. B., Di Rocco, J., Di Ruscio, D., Kolovos, D. S., Korkontzelos, I., Hansen, S., Malo, P., Matragkas, N., Paige, R. F. and Vinju, J., OSSMETER: Automated Measurement and Analysis of Open Source Software, in: Proceedings of the Projects Showcase at the Software Technologies: Applications and Foundations 2015 (STAF 2015), 2015

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Alnazzawi, N., Thompson, P. and Ananiadou, S., Mapping Phenotypic Information in Heterogeneous Textual Sources to a Domain-Specific Terminological Resource (2016), in: PLOS ONE, 11:9(e0162287)

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Zerva, C. and Ananiadou, S., Event Extraction in pieces: Tackling the partial event identification problem on unseen corpora, in: Proceedings of the 2015 Workshop on Biomedical Natural Language Processing (BioNLP 2015), pages 31-41, 2015

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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. and Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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Thompson, P., Carter, J., McNaught, J. and Ananiadou, S., Semantically Enhanced Search System for Historical Medical Archives, in: Proceedings of DigitalHeritage 2015, pages 387 - 390, 2015

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Rehm, G., Uszkoreit, H., Ananiadou, S., Bel, N., Bieleviciene, A., Borin, L., Branco, A., Budin, G., Calzolari, N., Daelemans, W., Garabik, R., Grobelnik, M., Garcia-Mateo, C., Van Genabith, J., Hajic, J., Hernaez, I., Judge, J., Koeva, S., Krek, S., Krstev, C., Linden, K., Magnini, B., Mariani, J., McNaught, J., Melero, M., Monachini, M., Moreno, A., Odijk, J., Ogrodniczuk, M., Pezik, P., Piperidis, S., Przepiorkowski, A., Rognvaldsson, E., Rosner, M., Pedersen, B., Skadina, I., De Smedt, K., Tadic, M., Thompson, P., Tufis, D., Varadi, T., Vasiljevs, A., Vider, K. and Zabarskaite, J., The Strategic Impact of META-NET on the Regional, National and International Level, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), pages 1517-1524, European Language Resources Association, 2014

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Rosner, M., Attard, A., Thompson, P., Gatt, A. and Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Human Language Technology Challenges for Computer Science and Linguistics, pages 315-326, Springer, 2014

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Nawaz, R., Thompson, P. and Ananiadou, S., Towards Event-based Discourse Analysis of Biomedical Text (2013), in: International Journal of Computational Linguistics and Applications, 4:2(101-120)

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Thompson, P., McNaught, J. and Ananiadou, S., Customised OCR Correction for Historical Medical Text, in: Proceedings of DigitalHeritage 2015, pages 35 - 42, 2015

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Xu, Y., Chen, L., Wei, J., Ananiadou, S., Fan, Y., Qian, Y., Chang, E. I-C. and Tsujii, J., Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary (2015), in: BMC Bioinformatics, 16(149)

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Korkontzelos, I., Piliouras, D., Dowsey, A. and Ananiadou, S., Boosting Drug Named Entity Recognition using an Aggregate Classifier (2015), in: Artificial Intelligence in Medicine (AIIM), Special issue of ICHI 2013 conference

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Miwa, M. and Ananiadou, S., Adaptable, high recall, event extraction system with minimal configuration (2015), in: BMC Bioinformatics, 16:Suppl 10.(S7)

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Bollegala, D., Kontonatsios, G. and Ananiadou, S., A Cross-lingual Similarity Measure for Detecting Biomedical Term Translations (2015), in: PLOS ONE, 10:6(e0126196)

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Thompson, P., Ananiadou, S. and Tsujii, J., The GENIA Corpus: Annotation Levels and Applications, in: Handbook of Linguistic Annotation, pages 1395-1432, Springer, 2017

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O'Mara-Eves, A., Thomas, J., McNaught, J., Miwa, M. and Ananiadou, S., Using text mining for study identification in systematic reviews: A systematic review of current approaches (2015), in: Systematic Reviews, 4:1

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The Europe PMC Consortium, Europe PMC: a full-text literature database for the life sciences and platform for innovation (2015), in: Nucleic Acids Research, 43:D1(D1042-D1048)

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Alnazzawi, N., Thompson, P., Batista-Navarro, R. and Ananiadou, S., Using text mining techniques to extract phenotypic information from the PhenoCHF corpus (2015), in: BMC Medical Informatics and Decision Making, 15:Suppl. 2(S3)

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Batista-Navarro, R., Rak, R. and Ananiadou, S., Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics (2015), in: Journal of Cheminformatics, 7:Suppl 1(S6)

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MihÄƒilÄƒ, C., Batista-Navarro, R., Alnazzawi, N., Kontonatsios, G., Korkontzelos, I., Rak, R., Thompson, P. and Ananiadou, S., Mining the biomedical literature, in: Healthcare Data Analytics, pages 251-308, CRC Press, 2015

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Xu, Y., Hua, J., Ni, Z., Chen, Q., Fan, Y., Ananiadou, S., Chang, E. I-C. and Tsujii, J., Anatomical entity recognition with a hierarchical framework augmented by external resources (2014), in: PLOS ONE, 9:10(e108396)

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Comeau, Donald C., Batista-Navarro, R., Dai, Hong-Jie, Islamaj DoÄŸan, Rezarta, Jimeno Yepes, Antonio, Khare, Ritu, Lu, Zhiyong, Marques, Hernani, Mattingly, Carolyn J., Neves, M., Peng, Yifan, Rak, R., Rinaldi, F., Tsai, Richard Tzong-Han, Verspoor, K., Wiegers, Thomas C., Wu, Cathy H. and Wilbur, W., BioC interoperability track overview (2014), in: Database: The Journal of Biological Databases and Curation, 2014

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Kontonatsios, G., Korkontzelos, I., Tsujii, J. and Ananiadou, S., Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora, in: Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP), Doha, Qatar, pages 1701-1712, Association for Computational Linguistics, 2014

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Mu, T., Goulermas, J. Y, Korkontzelos, I. and Ananiadou, S., Descriptive Clustering via Discriminant Learning in a Coembedded Space of Multi-level Similarities (2016), in: Journal of the Association for Information Science and Technology, 67:1(106-133)

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