Publication list - NaCTeM Publications

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Tsuruoka, Y., Ananiadou, S. and Tsujii, J., A Machine Learning Approach To Acronym Generation, in: Proceedings of the Workshop On Linking Biological Literature Ontologies And Databases: Mining Biological Semantics (BioLink 2005), pages 25-31, 2005

Tsujii, J. and Ananiadou, S., Thesaurus or Logical Ontology, Which One Do We Need for Text Mining? (2005), in: Language Resources and Evaluation, 39:1(77-90)

Tsuruoka, Y., Tateisi, Y., Kim, J.-D., Ohta, T., McNaught, J., Ananiadou, S. and Tsujii, J., Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, pages 382--392, Springer-Verlag, 2005

SpasiÄ‡, I. and Ananiadou, S., A flexible measure of contextual similarity for biomedical terms., in: Proceedings of the Pacific Symposium on Biocomputing 10, pages 197--208, 2005

SpasiÄ‡, I., Ananiadou, S. and Tsujii, J., MaSTerClass: a case-based reasoning system for the classification of biomedical terms (2005), in: Bioinformatics, 21:11(2748--2758)

SpasiÄ‡, I., Ananiadou, S., McNaught, J. and Kumar, A., Text mining and ontologies in biomedicine: making sense of raw text. (2005), in: Briefings in Bioinformatics, 6:3(239--251)

Rice, S., NenadiÄ‡, G. and Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

Okanohara, D. and Tsujii, J., Assigning Polarity Scores to Reviews Using Machine Learning Techniques, in: Natural Language Processing - IJCNLP 2005, Springer-Verlag, 2005

NenadiÄ‡, G., SpasiÄ‡, I. and Ananiadou, S., Mining Biomedical Abstracts: Whatâ€™s in a Term?, in: Natural Language Processing â€“ IJCNLP 2004, Springer-Verlag, 2005

Ninomiya, T., Miyao, Y. and Tsujii, J., A Persistent Feature-Object Database for Intelligent Text Archive Systems, in: Natural Language Processing - IJCNLP 2004, pages 197--205, Springer-Verlag, 2005

Ninomiya, T., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Efficacy of Beam Thresholding, Unification Filtering and Hybrid Parsing in Probabilistic HPSG Parsing, in: Proceedings of IWPT 2005, pages 103--114, 2005

Miyao, Y. and Tsujii, J., Probabilistic disambiguation models for wide-coverage HPSG parsing, in: Proceedings of ACL 2005, pages 83--90, 2005

Matsuzaki, T., Miyao, Y. and Tsujii, J., Probabilistic CFG with Latent Annotations, in: Proceedings of ACL 2005, pages 75--82, 2005

Kazama, J. and Tsujii, J., Maximum Entropy Models with Inequality Constraints: A case study on text categorization (2005), in: Machine Learning, 60:1-3(169-194)

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Hara, T., Miyao, Y. and Tsujii, J., Adapting a probabilistic disambiguation model of an HPSG parser to a new domain, in: Natural Language Processing â€“ IJCNLP 2005, pages 199--210, Springer-Verlag, 2005

Ananiadou, S., Chruszcz, J., Keane, J., McNaught, J. and Watry, P., The National Centre for Text Mining: Aims and Objectives (2005), in: Ariadne, 42

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Yakushiji, A., Miyao, Y., Ohta, T., Tateisi, Y. and Tsujii, J., Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information Extraction, in: Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing (EMNLP), pages 284--292, 2006

Unno, Y., Ninomiya, T., Miyao, Y. and Tsujii, J., Trimming CFG Parse Trees for Sentence Compression Using Machine Learning Approaches, in: Proceedings of the COLING/ACL 2006 Main Conference Poster Sessions, pages 850--857, Association for Computational Linguistics, 2006

Okazaki, N. and Ananiadou, S., Building an Abbreviation Dictionary using a Term Recognition Approach (2006), in: Bioinformatics, 22:24(3089-3095)

Okazaki, N. and Ananiadou, S., Clustering Acronyms in Biomedical Text for Disambiguation, in: Proceedings of Fifth International conference on Language Resources and Evaluation (LREC 2006), pages 959-962, 2006

Ohta, T., Miyao, Y., Ninomiya, T., Tsuruoka, Y., Yakushiji, A., Masuda, K., Takeuchi, J., Yoshida, K., Hara, T., Kim, J.-D., Tateisi, Y. and Tsujii, J., An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing, in: Proceedings of the COLING/ACL 2006 Interactive Presentation Sessions, pages 17-20, 2006

Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. and Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), pages 1402--1405, 2006

Ninomiya, T., Matsuzaki, T., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Extremely Lexicalized Models for Accurate and Fast HPSG Parsing, in: Proceedings of EMNLP 2006, pages 155--163, 2006

NenadiÄ‡, G. and Ananiadou, S., Mining Semantically Related Terms from Biomedical Literature (2006), in: ACM Transactions on Asian Language Information Processing (TALIP), 5:1(22--43)

Miyao, Y., Ohta, T., Masuda, K., Tsuruoka, Y., Yoshida, K., Ninomiya, T. and Tsujii, J., Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive Textbases, in: Proceedings of COLING-ACL 2006, pages 1017--1024, 2006

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