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Matsuoka, Y., Ghosh, S., Kikuchi, N., SÃ¦tre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. en Kitano, H., Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, pagina's 139-140, Stanford University, 2009

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Wu, X., Okazaki, N. en Tsujii, J., Semi-Supervised Lexicon Mining from Parenthetical Expressions in Monolingual Web Pages, in: Proceedings of HLT-NAACL 2009, pagina's 424--432, 2009

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Okanohara, D. en Tsujii, J., Text Categorization with All Substring Features, in: SIAM International Conference on Data Mining (SDM), 2009

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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. en Tsujii, J., Overview of BioNLP'09 Shared Task on Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 1--9, 2009

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Sun, X. en Tsujii, J., Sequential Labeling with Latent Variables: An Exact Inference Algorithm and An Efficient Approximation, in: Proceedings of EACL 2009, pagina's 772-780, 2009

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Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. en Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pagina's 106--107, 2009

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SÃ¦tre, R., Miwa, M., Yoshida, K. en Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 103--106, 2009

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Pyysalo, S., Ohta, T., Kim, J.-D. en Tsujii, J., Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, pagina's 1--9, 2009

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Uematsu, S., Kim, J.-D. en Tsujii, J., Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics, in: Proceedings of BioNLP 2009 Workshop, pagina's 162--170, 2009

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Sun, X., Matsuzaki, T., Okanohara, D. en Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), pagina's 1236--1242, 2009

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Sun, X., Okazaki, N. en Tsujii, J., Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global Information, in: Proceedings of ACL-IJCNLP 2009, pagina's 905--913, 2009

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Sun, X., Zhang, Y., Matsuzaki, T., Tsuruoka, Y. en Tsujii, J., A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information, in: Proceedings of NAACL-HLT'09, pagina's 56--64, 2009

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Okanohara, D. en Tsujii, J., Learning Combination Features with L1 Regularization, in: Proceedings of NAACL-HLT, short papers, pagina's 97--100, 2009

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Cho, H. -C., Lee, D. -G., Lee, J. -T., Stenetorp, P., Tsujii, J. en Rim, H. -C., A Novel Word Segmentation Approach for Written Languages with Word Boundary Markers, in: Proceedings of ACL-IJCNLP Short Papers, pagina's 29--32, 2009

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Miwa, M., SÃ¦tre, R., Miyao, Y. en Tsujii, J., A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora, in: Proceedings of EMNLP 2009, pagina's 121--130, 2009

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Matsubayashi, Y., Okazaki, N. en Tsujii, J., A Comparative Study on Generalization of Semantic Roles in FrameNet., in: Proceedings of ACL-IJCNLP 2009, pagina's 19--27, 2009

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Yu, K. en Tsujii, J., Extracting Bilingual Dictionary from Comparable Corpora with Dependency Heterogeneity, in: Proceedings of NAACL-HLT 2009, pagina's 121--124, 2009

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Tsunakawa, T., Okazaki, N., Liu, X. en Tsujii, J., A Chinese-Japanese Lexical Machine Translation through a Pivot Language (2009), in: ACM Transactions on Asian Language Information Processing, 8:2(9:1--9:21)

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Miwa, M., SÃ¦tre, R., Miyao, Y. en Tsujii, J., Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers (2009), in: International Journal of Medical Informatics, 78:12(e39--e46)

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Miyao, Y., Sagae, K., SÃ¦tre, R., Matsuzaki, T. en Tsujii, J., Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction (2009), in: Bioinformatics, 25:3(394-400)

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Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. en Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), pagina's 34--48, 2009

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Piao, S., Rea, B., McNaught, J. en Ananiadou, S., Improving Full Text Search With Text Mining Tools, in: Proceedings of the 14th International Conference on Applications of Natural Language to Information Systems, pagina's 301-302, 2009

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Wang, X., Tsujii, J. en Ananiadou, S., Classifying Relations for Biomedical Named Entity Disambiguation, in: Procedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP'09), pagina's 1513--1522, 2009

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Sasaki, Y., Rea, B. en Ananiadou, S., Clinical Text Classification under the Open and Closed Topic Assumptions (2009), in: International Journal on Data Mining and Bioinformatics (IJDMB), 3:3(299--313)

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Tsuruoka, Y., Miyao, Y. en Tsujii, J., Towards efficient probabilistic HPSG parsing: integrating semantic and syntactic preference to guide the parsing, in: Proceedings of IJCNLP-04 Workshop: Beyond shallow analyses - Formalisms and statistical modeling for deep analyses, 2004

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