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Rosner, M., Attard, A., Thompson, P., Gatt, A. and Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Proceedings of the 5th Language & Technology Conference (LTC'2011), 2011
Stenetorp, P., Pyysalo, S., Ananiadou, S. and Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)
Batista-Navarro, R. and Ananiadou, S., Adapting the Cluster Ranking Supervised Model to Resolve Coreferences in the Drug Literature, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
Ohta, T., Pyysalo, S., Ananiadou, S. and Tsujii, J., Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
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Pyysalo, S., Ohta, T. and Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
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Thompson, P., Kano, Y., McNaught, J., Pettifer, S., Attwood, T. K., Keane, J. and Ananiadou, S., Promoting Interoperability of Resources in META-SHARE, in: Proceedings of the IJCNLP Workshop on Language Resources, Technology and Services in the Sharing Paradigm (LRTS), pages 50-58, 2011
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Korkontzelos, I., Mu, T., Restificar, A. and Ananiadou, S., Text mining for efficient search and assisted creation of clinical trials, in: Proceedings of the ACM Fourth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO 2011), 2011
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Pyysalo, S., Sætre, R., Tsujii, J. and Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pages 149--152, 2008
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Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S., Ohta, T. and Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pages 103--108, 2009
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Pyysalo, S., Ohta, T. and Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
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Ohta, T., Pyysalo, S., Miwa, M. and Tsujii, J., Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
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Ohta, T., Pyysalo, S., Miwa, M., Kim, J.-D. and Tsujii, J., Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, pages 19--27, Association for Computational Linguistics, 2010
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Ohta, T., Pyysalo, S., Kim, J.-D. and Tsujii, J., A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928)
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Nguyen, N. T. H., Kim, J.-D. and Tsujii, J., Overview of BioNLP 2011 Protein Coreference Shared Task, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 74--82, Association for Computational Linguistics, 2011
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Andrade, D., Matsuzaki, T. and Tsujii, J., Learning the Optimal Use of Dependency-parsing Information for Finding Translations with Comparable Corpora, in: Proceedings of the 4th Workshop on Building and Using Comparable Corpora: Comparable Corpora and the Web, pages 10--18, Association for Computational Linguistics, 2011
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Iwasawa, S., Hanaoka, H., Matsuzaki, T., Miyao, Y. and Tsujii, J., A Collaborative Annotation between Human Annotators and a Statistical Parser, in: Proceedings of the 5th Linguistic Annotation Workshop, pages 56--64, Association for Computational Linguistics, 2011
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Usami, Y., Cho, H. -C., Okazaki, N. and Tsujii, J., Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition, in: Proceedings of the BioNLP 2011 Workshop, pages 65--73, Association for Computational Linguistics, 2011
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Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. and Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, pages 214--221, IEEE Computer Society, 2010
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Andrade, D., Matsuzaki, T. and Tsujii, J., Effective use of dependency structure for bilingual lexicon creation, in: Proceedings of the 12th international conference on Computational linguistics and intelligent text processing (CICLing'11) - Volume Part II, Tokyo, Japan, pages 80--92, Springer-Verlag, 2011
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Stenetorp, P., Topić, G., Pyysalo, S., Ohta, T., Kim, J.-D. and Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 112--120, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T. and Tsujii, J., Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, pages 83--88, Association for Computational Linguistics, 2011
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