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Ananiadou, S. en McNaught, J., Introduction to Text Mining in Biology, in: Text Mining for Biology and Biomedicine, pagina's 1--12, Artech House, Inc., 2006

Kim, J.-D., Ohta, T., Tsuruoka, Y., Tateisi, Y. en Collier, N., Introduction to the Bio-Entity Recognition Task at JNLPBA, in: Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA-04), pagina's 70--75, 2004

Ananiadou, S., Friedman, C. en Tsujii, J., Introduction: named entity recognition in biomedicine (2004), in: Journal of Biomedical Informatics, 37:6(393--395)

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Trieu, H-L., Nguyen, N. T. H., Miwa, M. en Ananiadou, S., Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts, in: Proceedings of the BioNLP 2018 workshop, pagina's 183-188, 2018

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S. en Tsujii, J., Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403)

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Vasquez-Rodriguez, L., Shardlow, M., Przybyɫa, P. en Ananiadou, S., Investigating Text Simplification Evaluation, in: Findings of the Association for Computational Linguistics: ACL-IJCNLP 2021, pagina's 876-882, 2021

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Tsuruoka, Y. en Tsujii, J., Iterative CKY Parsing for Probabilistic Context-Free Grammars, in: Natural Language Processing - IJCNLP 2004, pagina's 52-60, Springer-Verlag, 2005

Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Kleio: a knowledge-enriched information retrieval system for biology, in: Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval, Singapore, Singapore, pagina's 787--788, ACM, 2008

Inan, E., Thompson, P., Christopoulou, F., Yates, T. en Ananiadou, S., Knowledge Graph Enrichment of a Semantic Search System for Construction Safety, in: Intelligent Systems and Applications. IntelliSys 2022., pagina's 33-52, Springer, Cham, 2022

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Xie, Q., Tiwari, P. en Ananiadou, S., Knowledge-enhanced Graph Topic Transformer for Explainable Biomedical Text Summarization (2023), in: IEEE Journal of Biomedical and Health Informatics

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Hua, Y., Liu, F., Yang, K, Li, Z., Sheu, Y., Zhou, P., Moran, L. V., Ananiadou, S. en Beam, A., Large Language Models in Mental Health Care: a Scoping Review, arXiv, 2024

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Van Landeghem, S., BjÃ¶rne, J., Wei, C-. H, Hakala, K., Pyysalo, S., Ananiadou, S., Kao, H. -Y., Lu, Z., Salakoski, T., Van de Peer, Y. en Ginter, F., Large-scale event extraction from literature with multi-level gene normalization (2013), in: PLOS ONE, 8:4(e55814)

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Sun, X., Matsuzaki, T., Okanohara, D. en Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), pagina's 1236--1242, 2009

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Okanohara, D. en Tsujii, J., Learning Combination Features with L1 Regularization, in: Proceedings of NAACL-HLT, short papers, pagina's 97--100, 2009

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Vasilakes, J., Zerva, C., Miwa, M. en Ananiadou, S., Learning Disentangled Representations of Negation and Uncertainty, in: Proceedings of ACL 2022, pagina's 8380–8397, 2022

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Tsuruoka, Y., McNaught, J., Tsujii, J. en Ananiadou, S., Learning string similarity measures for gene/protein name dictionary look-up using logistic regression (2007), in: Bioinformatics, 23:20(2768-2774)

Andrade, D., Matsuzaki, T. en Tsujii, J., Learning the Optimal Use of Dependency-parsing Information for Finding Translations with Comparable Corpora, in: Proceedings of the 4th Workshop on Building and Using Comparable Corpora: Comparable Corpora and the Web, pagina's 10--18, Association for Computational Linguistics, 2011

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SpasiÄ‡, I., NenadiÄ‡, G. en Ananiadou, S., Learning to Classify Biomedical Terms through Literature Mining and Genetic Algorithms, in: Intelligent Data Engineering and Automated Learning â€“ IDEAL 2004, pagina's 345--351, Springer-Verlag, 2004

Espinosa, K., Batista-Navarro, R. en Ananiadou, S., Learning to recognise named entities in Tweets by exploiting weakly labelled data, in: Proceedings of the 2nd Workshop on Noisy User-generated Text (W-NUT 2016), 2016

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Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. en Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), pagina's 1402--1405, 2006

Soto, A., Zerva, C., Batista-Navarro, R. en Ananiadou, S., LitPathExplorer: A Confidence-based Visual Text Analytics Tool for Exploring Literature-Enriched Pathway Models (2017), in: Bioinformatics, 34:8(1389-1397)

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Yu, Z., Yang, K, Liu, Z. en Ananiadou, S., Locating Factual Knowledge in Large Language Models: Exploring the Residual Stream and Analyzing Subvalues in Vocabulary Space, arXiv, 2023

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Korkontzelos, I. en Ananiadou, S., Locating Requests among Open Source Software Communication Messages, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, pagina's 1347-1354, European Language Resources Association (ELRA), 2014

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Bishop, J., Xie, Q. en Ananiadou, S., LongDocFACTScore: Evaluating the Factuality of Long Document Abstractive Summarisation, in: Proceedings of LREC-COLING 2024, pagina's 10777-10789, 2024

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Bannach-Brown, A., Przybyɫa, P., Thomas, J., Rice, A., Ananiadou, S., Liao, J. en Macleod, M. R., Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error (2019), in: Systematic Reviews, 8(23)

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