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I

Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. and Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pages 106--107, 2009
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Xie, Q., Huang, J., Du, P., Peng, M. and Nie., J. -Y., Inductive Topic Variational Graph Auto-Encoder for Text Classification, in: Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2021
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Kano, Y., McCrochon, L., Ananiadou, S. and Tsujii, J., Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit, in: Proceedings of the NAACL HLT Workshop on Software Engineering, Testing, and Quality Assurance for Natural Language Processing, pages 22--30, 2009
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Piao, S., Ananiadou, S. and McNaught, J., Integrating Annotation Tools into UIMA for Interoperability, in: Proceedings of the UK e-Science AHM Conference 2007, pages 575--582, 2007
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Rak, R., Rowley, A., Carter, J., Batista-Navarro, R. and Ananiadou, S., Interoperability and Customisation of Annotation Schemata in Argo, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, pages 3837-3842, European Language Resources Association (ELRA), 2014
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Yu, Z. and Ananiadou, S., Interpreting Arithmetic Mechanism in Large Language Models through Comparative Neuron Analysis, in: Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, pages 3293–3306, 2024
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Ananiadou, S. and McNaught, J., Introduction to Text Mining in Biology, in: Text Mining for Biology and Biomedicine, pages 1--12, Artech House, Inc., 2006
Kim, J.-D., Ohta, T., Tsuruoka, Y., Tateisi, Y. and Collier, N., Introduction to the Bio-Entity Recognition Task at JNLPBA, in: Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA-04), pages 70--75, 2004
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Ananiadou, S., Friedman, C. and Tsujii, J., Introduction: named entity recognition in biomedicine (2004), in: Journal of Biomedical Informatics, 37:6(393--395)
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Vasquez-Rodriguez, L., Shardlow, M., Przybyɫa, P. and Ananiadou, S., Investigating Text Simplification Evaluation, in: Findings of the Association for Computational Linguistics: ACL-IJCNLP 2021, pages 876-882, 2021
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Tsuruoka, Y. and Tsujii, J., Iterative CKY Parsing for Probabilistic Context-Free Grammars, in: Natural Language Processing - IJCNLP 2004, pages 52-60, Springer-Verlag, 2005
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K

Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Kleio: a knowledge-enriched information retrieval system for biology, in: Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval, Singapore, Singapore, pages 787--788, ACM, 2008
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Inan, E., Thompson, P., Christopoulou, F., Yates, T. and Ananiadou, S., Knowledge Graph Enrichment of a Semantic Search System for Construction Safety, in: Intelligent Systems and Applications. IntelliSys 2022., pages 33-52, Springer, Cham, 2022
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L

Sun, X., Matsuzaki, T., Okanohara, D. and Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), pages 1236--1242, 2009
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Okanohara, D. and Tsujii, J., Learning Combination Features with L1 Regularization, in: Proceedings of NAACL-HLT, short papers, pages 97--100, 2009
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