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F

Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Fast Full Parsing by Linear-Chain Conditional Random Fields, in: Proceedings of the 12th Conference of European Chapter of the Association for Computational Linguistics (EACL-09), pages 790--798, 2009
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Miyao, Y. and Tsujii, J., Feature Forest Models for Probabilistic HPSG Parsing (2008), in: Computational Linguistics, 34:1(35–80)
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Wu, X., Matsuzaki, T. and Tsujii, J., Fine-grained Tree-to-String Translation Rule Extraction, in: Proceedings of The 48th Annual Meeting of the Association for Computational Linguistics (ACL 2010), pages 325--334, 2010
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Tam, W.L., Miyao, Y. and Tsujii, J., Framework independent summarized parser output and its documentation, in: Proceedings of grammar engineering across framework 2007 (GEAF07), pages 319--331, 2007
Ohta, T., Pyysalo, S. and Tsujii, J., From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, pages 105--113, Association for Computational Linguistics, 2011
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Sætre, R., Miwa, M., Yoshida, K. and Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pages 103--106, 2009
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Kim, J.-D., Ohta, T., Oda, K. and Tsujii, J., From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature, in: Proceedings of the 6th Asia Pacific Bioinformatics Conference, pages 165-176, Imperial College Press, 2008
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G

Dang, L. D., Phan, U. T. P. and Nguyen, N. T. H., GENA: A knowledge graph for nutrition and mental health (2023), in: Journal of Biomedical Informatics, 145(10446)
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H

Tekiner, F., Ananiadou, S., Tsuruoka, Y. and Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009
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Sasaki, Y., Tsuruoka, Y., McNaught, J. and Ananiadou, S., How to Make the Most of NE Dictionaries in Statistical NER, in: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008), pages 63--70, Association for Computational Linguistics, 2008
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Sagae, K., Miyao, Y. and Tsujii, J., HPSG parsing with shallow dependency constraints, in: Proceedings of the 44th Meeting of the Association for Computational Linguistics, pages 624--631, 2007
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Zhang, Y., Matsuzaki, T. and Tsujii, J., HPSG Supertagging: A Sequence Labeling View, in: Proceedings of 11th International Conference on Parsing Technology (IWPT'09), pages 210--213, 2009
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Inan, E., Thompson, P., Yates, T. and Ananiadou, S., HSEarch: semantic search system for workplace accident reports, in: Proceedings of the 43rd European Confererence on Information Retrieval (ECIR 2021), pages 514-519, 2021
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