Publication list - NaCTeM Publications

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Batista-Navarro, R., Kontonatsios, G., MihÄƒilÄƒ, C., Thompson, P., Rak, R., Nawaz, R., Korkontzelos, I. and Ananiadou, S., Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform, in: Computational Linguistics and Intelligent Text Processing, pages 559-571, Springer Berlin Heidelberg, 2013

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Tsuruoka, Y., Tsujii, J. and Ananiadou, S., FACTA: a text search engine for finding associated biomedical concepts (2008), in: Bioinformatics, 24:21(2259-60)

Luo, Z., Xie, Q. and Ananiadou, S., Factual consistency evaluation of summarization in the Era of large language models (2024), in: Expert Systems with Applications, 254(124456)

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Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Fast Full Parsing by Linear-Chain Conditional Random Fields, in: Proceedings of the 12th Conference of European Chapter of the Association for Computational Linguistics (EACL-09), pages 790--798, 2009

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Miyao, Y. and Tsujii, J., Feature Forest Models for Probabilistic HPSG Parsing (2008), in: Computational Linguistics, 34:1(35â€“80)

Kano, Y., Nguyen, N. T. H., SÃ¦tre, R., Yoshida, K., Miyao, Y., Tsuruoka, Y., Matsubayashi, Y., Ananiadou, S. and Tsujii, J., Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example., in: Proceedings of the Pacific Symposium on Biocomputing 2008 (PSB 2008), pages 616--627, 2008

Xie, Q., Han, W., Chen, Z., Xiang, R., Zhang, X., He, Y., Xiao, M., Li, D., Dai, Y., Feng, D., Xu, Y., Kang, H., Kuang, Z., Yuan, C., Yang, K, Luo, Z., Zhang, T., Liu, Z., Xiong, G., Deng, Z., Jiang, Y., Yao, Z., Li, H., Yu, Y., Lopez-Lira, A., Wang, B., Lai, Y., Wang, H., Peng, M., Ananiadou, S. and Huang, J., FinBen: An Holistic Financial Benchmark for Large Language Models, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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Wu, X., Matsuzaki, T. and Tsujii, J., Fine-grained Tree-to-String Translation Rule Extraction, in: Proceedings of The 48th Annual Meeting of the Association for Computational Linguistics (ACL 2010), pages 325--334, 2010

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Xie, Q., Huang, J., Li, D., Chen, Z., Xiang, R., Xiao, M., Yu, Y., Somasundaram, V., Yang, K, Yuan, C., Luo, Z., Liu, Z., He, Y., Jiang, Y., Li, H., Feng, D., Liu, X. -Y., Wang, B., Wang, H., Lai, Y., Suchow, J., Lopez-Lira, A., Peng, M. and Ananiadou, S., FinNLP-AgentScen-2024 Shared Task: Financial Challenges in Large Language Models - FinLLMs, in: Proceedings of the Eighth Financial Technology and Natural Language Processing and the 1st Agent AI for Scenario Planning, pages 119- 126, 2024

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Liu, Z., Zhang, X., Yang, K, Xie, Q., Huang, J. and Ananiadou, S., FMDLlama: Financial Misinformation Detection based on Large Language Models, arXiv, 2024

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Tam, W.L., Miyao, Y. and Tsujii, J., Framework independent summarized parser output and its documentation, in: Proceedings of grammar engineering across framework 2007 (GEAF07), pages 319--331, 2007

Ohta, T., Pyysalo, S. and Tsujii, J., From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, pages 105--113, Association for Computational Linguistics, 2011

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SÃ¦tre, R., Miwa, M., Yoshida, K. and Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pages 103--106, 2009

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Kim, J.-D., Ohta, T., Oda, K. and Tsujii, J., From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature, in: Proceedings of the 6th Asia Pacific Bioinformatics Conference, pages 165-176, Imperial College Press, 2008

Cao, J., Peek, N., Renehan, A. G and Ananiadou, S., Gaussian Distributed Prototypical Network for Few-shot Genomic Variant Detection, in: Proceedings of BioNLP 2023, pages 26–36, 2023

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Dang, L. D., Phan, U. T. P. and Nguyen, N. T. H., GENA: A knowledge graph for nutrition and mental health (2023), in: Journal of Biomedical Informatics, 145(10446)

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Bishop, J., Xie, Q. and Ananiadou, S., GenCompareSum: a hybrid unsupervised summarization method using salience, in: Proceedings of BioNLP 2022, pages 220–240, 2022

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Stenetorp, P., Pyysalo, S., Ananiadou, S. and Tsujii, J., Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26)

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Meziane, F., Athanasakis, N. and Ananiadou, S., Generating Natural Language specifications from UML class diagrams (2008), in: Requirements Engineering, 13:1(1--18)

Cao, J. and Ananiadou, S., GenerativeRE: Incorporating a Novel Copy Mechanism and Pretrained Model for Joint Entity and Relation Extraction, in: Findings of EMNLP, pages 2119–2126, 2021

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Liu, B, Schlegel, V., Thompson, P., Batista-Navarro, R. and Ananiadou, S., Global information-aware argument mining based on a top-down multi-turn QA model (2023), in: Information Processing & Management, 60:5(103445)

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Luo, Z., Liu, L., Ananiadou, S. and Xie, Q., Graph Contrastive Topic Model (2024), in: Expert Systems with Applications, 255:Part C(124631)

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Xie, Q., Huang, J., Saha, T and Ananiadou, S., GRETEL: Graph Contrastive Topic Enhanced Language Model for Long Document Extractive Summarization, in: Proceedings of COLING, pages 6259–6269, 2022

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Wang, Y., Feng, D., Dai, Y., Chen, Z., Huang, J., Ananiadou, S., Xie, Q. and Wang, H., HARMONIC: Harnessing LLMs for Tabular Data Synthesis and Privacy Protection, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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Black, W.J., Rupp, C. J., Nobata, C., McNaught, J., Tsujii, J. and Ananiadou, S., High-Precision Semantic Search by Generating and Testing Questions, in: Proceedings of the UK e-Science All Hands Meeting, 2010

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