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Batista-Navarro, R., Kontonatsios, G., MihÄƒilÄƒ, C., Thompson, P., Rak, R., Nawaz, R., Korkontzelos, I. und Ananiadou, S., Facilitating the Analysis of Discourse Phenomena in an Interoperable NLP Platform, in: Computational Linguistics and Intelligent Text Processing, Seiten 559-571, Springer Berlin Heidelberg, 2013

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Tsuruoka, Y., Tsujii, J. und Ananiadou, S., FACTA: a text search engine for finding associated biomedical concepts (2008), in: Bioinformatics, 24:21(2259-60)

Luo, Z., Xie, Q. und Ananiadou, S., Factual consistency evaluation of summarization in the Era of large language models (2024), in: Expert Systems with Applications, 254(124456)

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Tsuruoka, Y., Tsujii, J. und Ananiadou, S., Fast Full Parsing by Linear-Chain Conditional Random Fields, in: Proceedings of the 12th Conference of European Chapter of the Association for Computational Linguistics (EACL-09), Seiten 790--798, 2009

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Miyao, Y. und Tsujii, J., Feature Forest Models for Probabilistic HPSG Parsing (2008), in: Computational Linguistics, 34:1(35â€“80)

Kano, Y., Nguyen, N. T. H., SÃ¦tre, R., Yoshida, K., Miyao, Y., Tsuruoka, Y., Matsubayashi, Y., Ananiadou, S. und Tsujii, J., Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example., in: Proceedings of the Pacific Symposium on Biocomputing 2008 (PSB 2008), Seiten 616--627, 2008

Xie, Q., Han, W., Chen, Z., Xiang, R., Zhang, X., He, Y., Xiao, M., Li, D., Dai, Y., Feng, D., Xu, Y., Kang, H., Kuang, Z., Yuan, C., Yang, K, Luo, Z., Zhang, T., Liu, Z., Xiong, G., Deng, Z., Jiang, Y., Yao, Z., Li, H., Yu, Y., Lopez-Lira, A., Wang, B., Lai, Y., Wang, H., Peng, M., Ananiadou, S. und Huang, J., FinBen: An Holistic Financial Benchmark for Large Language Models, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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Wu, X., Matsuzaki, T. und Tsujii, J., Fine-grained Tree-to-String Translation Rule Extraction, in: Proceedings of The 48th Annual Meeting of the Association for Computational Linguistics (ACL 2010), Seiten 325--334, 2010

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Xie, Q., Huang, J., Li, D., Chen, Z., Xiang, R., Xiao, M., Yu, Y., Somasundaram, V., Yang, K, Yuan, C., Luo, Z., Liu, Z., He, Y., Jiang, Y., Li, H., Feng, D., Liu, X. -Y., Wang, B., Wang, H., Lai, Y., Suchow, J., Lopez-Lira, A., Peng, M. und Ananiadou, S., FinNLP-AgentScen-2024 Shared Task: Financial Challenges in Large Language Models - FinLLMs, in: Proceedings of the Eighth Financial Technology and Natural Language Processing and the 1st Agent AI for Scenario Planning, Seiten 119- 126, 2024

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Liu, Z., Zhang, X., Yang, K, Xie, Q., Huang, J. und Ananiadou, S., FMDLlama: Financial Misinformation Detection based on Large Language Models, arXiv, 2024

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Tam, W.L., Miyao, Y. und Tsujii, J., Framework independent summarized parser output and its documentation, in: Proceedings of grammar engineering across framework 2007 (GEAF07), Seiten 319--331, 2007

Ohta, T., Pyysalo, S. und Tsujii, J., From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, Seiten 105--113, Association for Computational Linguistics, 2011

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SÃ¦tre, R., Miwa, M., Yoshida, K. und Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, Seiten 103--106, 2009

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Kim, J.-D., Ohta, T., Oda, K. und Tsujii, J., From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature, in: Proceedings of the 6th Asia Pacific Bioinformatics Conference, Seiten 165-176, Imperial College Press, 2008

Cao, J., Peek, N., Renehan, A. G und Ananiadou, S., Gaussian Distributed Prototypical Network for Few-shot Genomic Variant Detection, in: Proceedings of BioNLP 2023, Seiten 26–36, 2023

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Dang, L. D., Phan, U. T. P. und Nguyen, N. T. H., GENA: A knowledge graph for nutrition and mental health (2023), in: Journal of Biomedical Informatics, 145(10446)

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Bishop, J., Xie, Q. und Ananiadou, S., GenCompareSum: a hybrid unsupervised summarization method using salience, in: Proceedings of BioNLP 2022, Seiten 220–240, 2022

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Stenetorp, P., Pyysalo, S., Ananiadou, S. und Tsujii, J., Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26)

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Meziane, F., Athanasakis, N. und Ananiadou, S., Generating Natural Language specifications from UML class diagrams (2008), in: Requirements Engineering, 13:1(1--18)

Cao, J. und Ananiadou, S., GenerativeRE: Incorporating a Novel Copy Mechanism and Pretrained Model for Joint Entity and Relation Extraction, in: Findings of EMNLP, Seiten 2119–2126, 2021

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Liu, B, Schlegel, V., Thompson, P., Batista-Navarro, R. und Ananiadou, S., Global information-aware argument mining based on a top-down multi-turn QA model (2023), in: Information Processing & Management, 60:5(103445)

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Luo, Z., Liu, L., Ananiadou, S. und Xie, Q., Graph Contrastive Topic Model (2024), in: Expert Systems with Applications, 255:Part C(124631)

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Xie, Q., Huang, J., Saha, T und Ananiadou, S., GRETEL: Graph Contrastive Topic Enhanced Language Model for Long Document Extractive Summarization, in: Proceedings of COLING, Seiten 6259–6269, 2022

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Wang, Y., Feng, D., Dai, Y., Chen, Z., Huang, J., Ananiadou, S., Xie, Q. und Wang, H., HARMONIC: Harnessing LLMs for Tabular Data Synthesis and Privacy Protection, in: Proceedings of the Thirty-Eighth Annual Conference on Neural Information Processing Systems (NeurIPS), 2024

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Black, W.J., Rupp, C. J., Nobata, C., McNaught, J., Tsujii, J. und Ananiadou, S., High-Precision Semantic Search by Generating and Testing Questions, in: Proceedings of the UK e-Science All Hands Meeting, 2010

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