Publication list - NaCTeM Publications

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Thompson, P., Iqbal, S. A., McNaught, J. and Ananiadou, S., Construction of an annotated corpus to support biomedical information extraction (2009), in: BMC Bioinformatics, 10(349)

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Thompson, P., Kano, Y., McNaught, J., Pettifer, S., Attwood, T. K., Keane, J. and Ananiadou, S., Promoting Interoperability of Resources in META-SHARE, in: Proceedings of the IJCNLP Workshop on Language Resources, Technology and Services in the Sharing Paradigm (LRTS), pages 50-58, 2011

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Thompson, P., McNaught, J. and Ananiadou, S., Customised OCR Correction for Historical Medical Text, in: Proceedings of DigitalHeritage 2015, pages 35 - 42, 2015

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Thompson, P., McNaught, J., Montemagni, S., Calzolari, N., del Gratta, R., Lee, V., Marchi, S., Monachini, M., Pezik, P., Quochi, V., Rupp, C. J., Sasaki, Y., Venturi, G., Rebholz-Schuhmann, D. and Ananiadou, S., The BioLexicon: a large-scale terminological resource for biomedical text mining (2011), in: BMC Bioinformatics, 12(397)

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Thompson, P., Nawaz, R., Korkontzelos, I., Black, W.J., McNaught, J. and Ananiadou, S., News Search Using Discourse Analytics, in: Proceedings of the 2013 Digital Heritage International Congress, Marseille, France, pages 597-604, IEEE, 2013

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Thompson, P., Nawaz, R., McNaught, J. and Ananiadou, S., Enriching News Events with Meta-knowledge Information (2016), in: Language Resources and Evaluation, 51:2(409-438)

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Thompson, P., Nawaz, R., McNaught, J. and Ananiadou, S., Enriching a biomedical event corpus with meta-knowledge annotation (2011), in: BMC Bioinformatics, 12(393)

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Thompson, P., Venturi, G., McNaught, J., Montemagni, S. and Ananiadou, S., Categorising Modality in Biomedical Texts, in: Proceedings of the LREC 2008 Workshop on Building and Evaluating Resources for Biomedical Text Mining., pages 27--34, 2008

Thompson, P., Yates, T., Inan, E. and Ananiadou, S., Semantic Annotation for Improved Safety in Construction Work, in: Proceedings of LREC 2020, pages 1983‑1992, 2020

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Tran, T. T., Le, P. and Ananiadou, S., One-shot to Weakly-Supervised Relation Classification using Language Models, in: Proceedings of the 3rd Conference on Automated Knowledge Base Construction, 2021

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Tran, T. T., Le, P. and Ananiadou, S., Revisiting Unsupervised Relation Extraction, in: Proceedings of ACL 2020, pages 7498–7505, 2020

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Tran, T. T., Miwa, M. and Ananiadou, S., Syntactically-Informed Word Representations from Graph Neural Network (2020), in: Neurocomputing, 413(431-443)

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Trieu, H-L., Duong, K. N. A., Nguyen, N. T. H., Miwa, M., Takamura, H. and Ananiadou, S., Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering, in: Proceedings of the 5th Workshop on BioNLP Open Shared Tasks, pages 196-205, 2019

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Trieu, H-L., Miwa, M. and Ananiadou, S., Named Entity Recognition for Cancer Immunology Research Using Distant Supervision, in: Proceedings of BioNLP 2022, pages 171-177, 2022

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Trieu, H-L., Miwa, M. and Ananiadou, S., BioVAE: a pre-trained latent variable language model for biomedical text mining (2022), 38:3(872-874)

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Trieu, H-L., Nguyen, N. T. H., Miwa, M. and Ananiadou, S., Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts, in: Proceedings of the BioNLP 2018 workshop, pages 183-188, 2018

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Trieu, H-L., Tran, T. T., Duong, K. N. A., Nguyen, A., Miwa, M. and Ananiadou, S., DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts (2020), in: Bioinformatics(btaa540)

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Tsujii, J., Natural Language Processing and Computational Linguistics (2021), in: Computational Linguistics, 47:4(707-727)

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Tsujii, J. and Ananiadou, S., Thesaurus or Logical Ontology, Which One Do We Need for Text Mining? (2005), in: Language Resources and Evaluation, 39:1(77-90)

Tsunakawa, T., Okazaki, N., Liu, X. and Tsujii, J., A Chinese-Japanese Lexical Machine Translation through a Pivot Language (2009), in: ACM Transactions on Asian Language Information Processing, 8:2(9:1--9:21)

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Tsunakawa, T., Okazaki, N. and Tsujii, J., Building Bilingual Lexicons Using Lexical Translation Probabilities via Pivot Languages, in: Proceedings of the 6th International Conference on Language Resources and Evaluation, pages 1664--1667, 2008

Tsunakawa, T. and Tsujii, J., Bilingual Synonym Identification with Spelling Variations, in: Proceedings of the 3rd international Joint Conference on Natural Language Processing, pages 457--464, 2008

Tsuruoka, Y., Ananiadou, S. and Tsujii, J., A Machine Learning Approach To Acronym Generation, in: Proceedings of the Workshop On Linking Biological Literature Ontologies And Databases: Mining Biological Semantics (BioLink 2005), pages 25-31, 2005

Tsuruoka, Y., McNaught, J. and Ananiadou, S., Normalizing biomedical terms by minimizing ambiguity and variability (2008), in: BMC Bioinformatics, 9:Suppl 3(S2)

Tsuruoka, Y., McNaught, J., Tsujii, J. and Ananiadou, S., Learning string similarity measures for gene/protein name dictionary look-up using logistic regression (2007), in: Bioinformatics, 23:20(2768-2774)

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