All publications sorted by author


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Rosner, M., Attard, A., Thompson, P., Gatt, A. and Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Human Language Technology Challenges for Computer Science and Linguistics, pages 315-326, Springer, 2014
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Rosner, M., Attard, A., Thompson, P., Gatt, A. and Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Proceedings of the 5th Language & Technology Conference (LTC'2011), 2011
Rupp, C. J., Thompson, P., Black, W.J., McNaught, J. and Ananiadou, S., A Specialised Verb Lexicon as the Basis of Fact Extraction in the Biomedical Domain, in: Proceedings of Interdisciplinary Workshop on Verbs: The Identification and Representation of Verb Features (Verb 2010), 2010
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Sætre, R., Kazuhiro, Y., Miwa, M., Matsuzaki, T., Kano, Y. and Tsujii, J., AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge, in: BioCreative II.5 Workshop 2009 special session | Digital Annotations, pages 33, CNIO, 2009
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Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., Connecting Text Mining and Pathways using the PathText Resource, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pages 1736-1740, European Language Resources Association (ELRA), 2008
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Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., PathText: Text Mining Tools Integrated with Biological Pathway, in: Genomes to Systems Conference 2008 Handbook, pages 65, The Consortium for Post-Genome Science, 2008
Sætre, R., Miwa, M., Yoshida, K. and Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pages 103--106, 2009
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Sætre, R., Sagae, K. and Tsujii, J., Syntactic features for protein-protein interaction extraction, in: Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), pages 6.1-6.14, CEUR Workshop Proceedings (CEUR-WS.org), 2008
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Sætre, R., Yoshida, K., Miwa, M., Matsuzaki, T., Kano, Y. and Tsujii, J., Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System (2010), in: Transactions on Computational Biology and Bioinformatics (TCBB), BioCreative II.5 Special Issue, 7:3(442-453)
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Sagae, K., Miyao, Y. and Tsujii, J., HPSG parsing with shallow dependency constraints, in: Proceedings of the 44th Meeting of the Association for Computational Linguistics, pages 624--631, 2007
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Sagae, K. and Tsujii, J., Dependency parsing and domain adaptation with LR models and parser ensembles, in: Proceedings of the CoNLL 2007 Shared Task in the Joint Conferences on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL'07 shared task), pages 1044-1050, 2007
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Saha, T and Ananiadou, S., Emotion-aware and Intent-controlled Empathetic Response Generation using Hierarchical Transformer Network, in: Proceedings of IJCNN at 2022 IEEE World Congress on Computational Intelligence, pages 1-8, 2022
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Sasaki, Y., McNaught, J. and Ananiadou, S., The value of an in-domain lexicon in genomics qa (2010), in: Journal of bioinformatics and computational biology, 8:1(147--161)
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Sasaki, Y., McNaught, J. and Ananiadou, S., The Value of an In-Domain Lexicon in Genomics QA, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), pages 47--55, 2009
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Sasaki, Y., Montemagni, S., Pezik, P., Rebholz-Schuhmann, D., McNaught, J. and Ananiadou, S., BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, pages 109--116, Turku Centre for Computer Science (TUCS), 2008
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Sasaki, Y., Rea, B. and Ananiadou, S., Clinical Text Classification under the Open and Closed Topic Assumptions (2009), in: International Journal on Data Mining and Bioinformatics (IJDMB), 3:3(299--313)
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Sasaki, Y., Rea, B. and Ananiadou, S., Multi-topic Aspects in Clinical Text Classification, in: BIBM '07: Proceedings of the 2007 IEEE International Conference on Bioinformatics and Biomedicine, pages 62--70, IEEE Computer Society, 2007
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Sasaki, Y., Thompson, P., Cotter, P., McNaught, J. and Ananiadou, S., Event Frame Extraction Based on a Gene Regulation Corpus, in: Proceedings of the 22nd International Conference on Computational Linguistics (Coling 2008), pages 761--768, Coling 2008 Organizing Committee, 2008
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Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Three BioNLP Tools Powered by the BioLexicon, in: Proceeedings of EACL 2009 Demonstration Session, pages 61--64, 2009
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Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Biological Event Recognition with Textual Induction, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), pages 91--96, 2009
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Sasaki, Y., Tsuruoka, Y., McNaught, J. and Ananiadou, S., How to Make the Most of NE Dictionaries in Statistical NER, in: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008), pages 63--70, Association for Computational Linguistics, 2008
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Sasaki, Y., Wang, X. and Ananiadou, S., Extracting Secondary Bio-Event Arguments with Extraction Constraints (2011), in: Computational Intelligence, 27:4(702-721)
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