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Ohta, T., Pyysalo, S. and Tsujii, J., From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, pages 105--113, Association for Computational Linguistics, 2011
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Ohta, T., Pyysalo, S. and Tsujii, J., Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 16--25, Association for Computational Linguistics, 2011
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Ohta, T., Pyysalo, S., Tsujii, J. and Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pages 27-36, 2012
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Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. and Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), pages 1402--1405, 2006
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Okanohara, D. and Tsujii, J., Learning Combination Features with L1 Regularization, in: Proceedings of NAACL-HLT, short papers, pages 97--100, 2009
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Okanohara, D. and Tsujii, J., Text Categorization with All Substring Features, in: SIAM International Conference on Data Mining (SDM), 2009
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Okanohara, D. and Tsujii, J., A discriminative language model with pseudo-negative samples, in: Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics (ACL 2007), pages 73--80, Association for Computational Linguistics, 2007
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Okanohara, D. and Tsujii, J., Assigning Polarity Scores to Reviews Using Machine Learning Techniques, in: Natural Language Processing - IJCNLP 2005, Springer-Verlag, 2005
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Okazaki, N. and Ananiadou, S., Clustering Acronyms in Biomedical Text for Disambiguation, in: Proceedings of Fifth International conference on Language Resources and Evaluation (LREC 2006), pages 959-962, 2006
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Okazaki, N., Ishizuka, M. and Tsujii, J., A Discriminative Approach to Japanese Abbreviation Extraction, in: Proceedings of the Third International Joint Conference on Natural Language Processing (2008), pages 889-894, 2008
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Okazaki, N., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., A Discriminative Candidate Generator for String Transformations, in: Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing (EMNLP 2008), pages 447-456, 2008
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Piao, S., Ananiadou, S. and McNaught, J., Integrating Annotation Tools into UIMA for Interoperability, in: Proceedings of the UK e-Science AHM Conference 2007, pages 575--582, 2007
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Piao, S., Ananiadou, S., Tsuruoka, Y., Sasaki, Y. and McNaught, J., Mining Opinion Polarity Relations of Citations, in: Proceedings of the 7th International Workshop on Computational Semantics, pages 366-371, 2007
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Piao, S., McNaught, J. and Ananiadou, S., Clustering Related Terms with Definitions, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pages 2013-2019, European Language Resources Association (ELRA), 2008
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Piao, S., Rea, B., McNaught, J. and Ananiadou, S., Improving Full Text Search With Text Mining Tools, in: Proceedings of the 14th International Conference on Applications of Natural Language to Information Systems, pages 301-302, 2009
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Piao, S., Tsuruoka, Y. and Ananiadou, S., Sentiment Analysis with Knowledge Resource and NLP Tools (2009), in: The International Journal of Interdisciplinary Social Sciences, 4:5(17--28)
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Piliouras, D., Korkontzelos, I., Dowsey, A. and Ananiadou, S., Dealing with data sparsity in Drug Named Entity Recognition, in: Proceedings of IEEE International Conference on Healthcare Informatics, Philadelhia, PA, pages 14-21, 2013
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Przybyɫa, P., Brockmeier, A. J. and Ananiadou, S., Quantifying Risk Factors in Medical Reports with a Context-Aware Linear Model (2019), in: Journal of the American Medical Informatics Association, 26:6(537–546)
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