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Soldatova, L. N., Kolluru, B., King, R. D., Qi, D. and Ananiadou, S., An ontology-based disambiguation of terms, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011
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Soto, A., Przybyɫa, P. and Ananiadou, S., Thalia: Semantic search engine for biomedical abstracts (2018), in: Bioinformatics, 35:10(1799–1801)
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Spasić, I. and Ananiadou, S., A flexible measure of contextual similarity for biomedical terms., in: Proceedings of the Pacific Symposium on Biocomputing 10, pages 197--208, 2005
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Spasić, I., Nenadić, G. and Ananiadou, S., Learning to Classify Biomedical Terms through Literature Mining and Genetic Algorithms, in: Intelligent Data Engineering and Automated Learning – IDEAL 2004, pages 345--351, Springer-Verlag, 2004
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Splendiani, A., Piao, S., Sasaki, Y., Ananiadou, S., McNaught, J. and Burgun, A, Compositional Enrichment of Bio-Ontologies, in: Proceedings of 11th Annual Bio-Ontologies Meeting, at the Intelligent Systems for Molecular Biology 2008 Conference (ISMB-2008), 2008
Stenetorp, P., Pyysalo, S., Ananiadou, S. and Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)
Stenetorp, P., Pyysalo, S., Topić, G., Ohta, T., Ananiadou, S. and Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pages 102-107, Association for Computational Linguistics, 2012
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Stenetorp, P., Pyysalo, S. and Tsujii, J., SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation, in: Proceedings of the BioNLP 2011 Workshop, pages 136-145, Association for Computational Linguistics, 2011
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Stenetorp, P., Topić, G., Pyysalo, S., Ohta, T., Kim, J.-D. and Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 112--120, Association for Computational Linguistics, 2011
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Sun, X., Matsuzaki, T., Okanohara, D. and Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), pages 1236--1242, 2009
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