Publication list - NaCTeM Publications

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Sun, X., Okazaki, N. and Tsujii, J., Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global Information, in: Proceedings of ACL-IJCNLP 2009, pages 905--913, 2009

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Sun, X. and Tsujii, J., Sequential Labeling with Latent Variables: An Exact Inference Algorithm and An Efficient Approximation, in: Proceedings of EACL 2009, pages 772-780, 2009

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Sun, X., Zhang, Y., Matsuzaki, T., Tsuruoka, Y. and Tsujii, J., A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information, in: Proceedings of NAACL-HLT'09, pages 56--64, 2009

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Sutcliffe, A., de Bruijn, O., Thew, S., Buchan, I., Jarvis, P., McNaught, J. and Procter, R., Developing visualization-based decision support tools for epidemiology (2014), in: Information Visulization, 13:1(3 -17)

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Sutcliffe, A., de Bruijn, O., Thew, S., Buchan, I., Jarvis, P., McNaught, J. and Procter, R., Developing visualization-based decision support tools for epidemiology (2012), in: Information Visualization

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Sutcliffe, A., Thew, S., de Bruijn, O., Buchan, I., Jarvis, P., McNaught, J. and Procter, R., User Engagement by User-Centred Design in e-Health (2010), in: Philosophical Transactions of the Royal Society A, 368:1926(4209-4224)

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Swainston, N., Batista-Navarro, R., Carbonel, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J. L., Mendes, P., Kell, D. B., Scrutton, N. and Breitling, R., biochem4j: integrated and extensible biochemical knowledge through graph databases (2017), in: PLOS ONE, 12:7(e0179130)

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Tam, W.L., Miyao, Y. and Tsujii, J., Framework independent summarized parser output and its documentation, in: Proceedings of grammar engineering across framework 2007 (GEAF07), pages 319--331, 2007

Tateisi, Y. and Tsujii, J., Part-of-Speech Annotation of Biology Research Abstracts, in: Proceedings of 4th International Conference on Language Resources and Evaluation (LREC 2004), pages 1267-1270, 2004

Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. and Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, pages 214--221, IEEE Computer Society, 2010

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Tekiner, F., Ananiadou, S., Tsuruoka, Y. and Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009

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The Europe PMC Consortium, Europe PMC: a full-text literature database for the life sciences and platform for innovation (2015), in: Nucleic Acids Research, 43:D1(D1042-D1048)

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Thew, S., Sutcliffe, A., de Bruijn, O., McNaught, J., Procter, R. and Buchan, I., Supporting Creativity and Appreciation of Uncertainty in Exploring Geo-coded Public Health Data (2010), in: Methods of Information in Medicine, 49

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Thew, S., Sutcliffe, A., de Bruijn, O., McNaught, J., Procter, R., Venters, C.C. and Buchan, I., Experience in e-Science Requirements Engineering, pages 277-282, 2008

Thew, S., Sutcliffe, A., Procter, R., de Bruijn, O., McNaught, J., Venters, C.C. and Buchan, I., Requirements Engineering for E-science: Experiences in Epidemiology (2009), in: IEEE Software, 26:1(80-87)

Thomas, J., McNaught, J. and Ananiadou, S., Applications of text mining within systematic reviews (2011), in: Research Synthesis Methods, 2:1(1-14)

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Thompson, P. and Ananiadou, S., HYPHEN: A flexible, hybrid method to map phenotype concept mentions to terminological resources (2018), in: Terminology, 24:1(91-121)

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Thompson, P. and Ananiadou, S., Extracting Gene-Disease Relations from Text to Support Biomarker Discovery, in: Proceedings of the 7th International conference on Digital Health, pages 180-189, 2017

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Thompson, P., Ananiadou, S., Basinas, I., Brinchmann, B. C., Cramer, C., Galea, K. S., Ge, C., Georgiadis, P., Kirkeleit, J., Kuijpers, E., Nguyen, N. T. H., Nuñez, R., Schlünssen, V., Stokholm, Z. A., Taher, E. A., Tinnerberg, H., van Tongeren, M. and Xie, Q., Supporting the working life exposome: Annotating occupational exposure for enhanced literature search (2024), in: PLoS ONE, 19:8(e0307844)

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Thompson, P., Ananiadou, S. and Tsujii, J., The GENIA Corpus: Annotation Levels and Applications, in: Handbook of Linguistic Annotation, pages 1395-1432, Springer, 2017

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Thompson, P., Batista-Navarro, R., Kontonatsios, G., Carter, J., Toon, E., McNaught, J., Timmermann, C., Worboys, M. and Ananiadou, S., Text Mining the History of Medicine (2016), in: PLOS One, 11:1(e0144717)

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Thompson, P., Boylan, K., Freemont, A. and Ananiadou, S., Supporting biomarker discovery using text mining, in: Proceedings of Informatics for Health 2017, 2017

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Thompson, P., Carter, J., McNaught, J. and Ananiadou, S., Semantically Enhanced Search System for Historical Medical Archives, in: Proceedings of DigitalHeritage 2015, pages 387 - 390, 2015

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Thompson, P., Cotter, P., McNaught, J., Ananiadou, S., Montemagni, S., Trabucco, A. and Venturi, G., Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pages 2159--2166, European Language Resources Association (ELRA), 2008

Thompson, P., Daikou, S., Ueno, K., Batista-Navarro, R., Tsujii, J. and Ananiadou, S., Annotation and Detection of Drug Effects in Text for Pharmacovigilance (2018), in: Journal of Cheminformatics, 10(37)

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