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SpasiÄ‡, I. und Ananiadou, S., Using automatically learnt verb selectional preferences for classification of biomedical terms (2004), in: Journal of Biomedical Informatics, 37:6(483--497)

SpasiÄ‡, I., Ananiadou, S., McNaught, J. und Kumar, A., Text mining and ontologies in biomedicine: making sense of raw text. (2005), in: Briefings in Bioinformatics, 6:3(239--251)

SpasiÄ‡, I., Ananiadou, S. und Tsujii, J., MaSTerClass: a case-based reasoning system for the classification of biomedical terms (2005), in: Bioinformatics, 21:11(2748--2758)

SpasiÄ‡, I., NenadiÄ‡, G. und Ananiadou, S., Learning to Classify Biomedical Terms through Literature Mining and Genetic Algorithms, in: Intelligent Data Engineering and Automated Learning â€“ IDEAL 2004, Seiten 345--351, Springer-Verlag, 2004

Splendiani, A., Piao, S., Sasaki, Y., Ananiadou, S., McNaught, J. und Burgun, A, Compositional Enrichment of Bio-Ontologies, in: Proceedings of 11th Annual Bio-Ontologies Meeting, at the Intelligent Systems for Molecular Biology 2008 Conference (ISMB-2008), 2008

Stenetorp, P., Pyysalo, S., Ananiadou, S. und Tsujii, J., Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26)

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Stenetorp, P., Pyysalo, S., Ananiadou, S. und Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)

Stenetorp, P., Pyysalo, S., Ohta, T., Ananiadou, S. und Tsujii, J., Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, Seiten 47-56, 2012

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Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. und Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 102-107, Association for Computational Linguistics, 2012

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Stenetorp, P., Pyysalo, S. und Tsujii, J., SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation, in: Proceedings of the BioNLP 2011 Workshop, Seiten 136-145, Association for Computational Linguistics, 2011

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Stenetorp, P., TopiÄ‡, G., Pyysalo, S., Ohta, T., Kim, J.-D. und Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 112--120, Association for Computational Linguistics, 2011

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Sun, X., Matsuzaki, T., Okanohara, D. und Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), Seiten 1236--1242, 2009

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Sun, X., Okazaki, N. und Tsujii, J., Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global Information, in: Proceedings of ACL-IJCNLP 2009, Seiten 905--913, 2009

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Sun, X. und Tsujii, J., Sequential Labeling with Latent Variables: An Exact Inference Algorithm and An Efficient Approximation, in: Proceedings of EACL 2009, Seiten 772-780, 2009

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Sun, X., Zhang, Y., Matsuzaki, T., Tsuruoka, Y. und Tsujii, J., A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information, in: Proceedings of NAACL-HLT'09, Seiten 56--64, 2009

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Sutcliffe, A., de Bruijn, O., Thew, S., Buchan, I., Jarvis, P., McNaught, J. und Procter, R., Developing visualization-based decision support tools for epidemiology (2014), in: Information Visulization, 13:1(3 -17)

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Sutcliffe, A., de Bruijn, O., Thew, S., Buchan, I., Jarvis, P., McNaught, J. und Procter, R., Developing visualization-based decision support tools for epidemiology (2012), in: Information Visualization

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Sutcliffe, A., Thew, S., de Bruijn, O., Buchan, I., Jarvis, P., McNaught, J. und Procter, R., User Engagement by User-Centred Design in e-Health (2010), in: Philosophical Transactions of the Royal Society A, 368:1926(4209-4224)

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Swainston, N., Batista-Navarro, R., Carbonel, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J. L., Mendes, P., Kell, D. B., Scrutton, N. und Breitling, R., biochem4j: integrated and extensible biochemical knowledge through graph databases (2017), in: PLOS ONE, 12:7(e0179130)

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Tam, W.L., Miyao, Y. und Tsujii, J., Framework independent summarized parser output and its documentation, in: Proceedings of grammar engineering across framework 2007 (GEAF07), Seiten 319--331, 2007

Tateisi, Y. und Tsujii, J., Part-of-Speech Annotation of Biology Research Abstracts, in: Proceedings of 4th International Conference on Language Resources and Evaluation (LREC 2004), Seiten 1267-1270, 2004

Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. und Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, Seiten 214--221, IEEE Computer Society, 2010

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Tekiner, F., Ananiadou, S., Tsuruoka, Y. und Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009

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The Europe PMC Consortium, Europe PMC: a full-text literature database for the life sciences and platform for innovation (2015), in: Nucleic Acids Research, 43:D1(D1042-D1048)

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Thew, S., Sutcliffe, A., de Bruijn, O., McNaught, J., Procter, R. und Buchan, I., Supporting Creativity and Appreciation of Uncertainty in Exploring Geo-coded Public Health Data (2010), in: Methods of Information in Medicine, 49

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