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Przybyɫa, P., Shardlow, M., Aubin, S., Bossy, R., {Eckart de Castilho}, R., Piperidis, S., McNaught, J. and Ananiadou, S., Text Mining Resources for the Life Sciences (2016), in: Database: The Journal of Biological Databases and Curation(baw145)
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Przybyɫa, P., Soto, A. and Ananiadou, S., Identifying Personalised Treatments and Clinical Trials for Precision Medicine using Semantic Search with Thalia, in: Proceedings of the Twenty-Fifth Text REtrieval Conference (TREC 2017), National Insitute of Standards and Technology, 2017
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Pyysalo, S., Ohta, T. and Ananiadou, S., Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, pages 58-66, Association for Computational Linguistics, 2013
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Pyysalo, S., Ohta, T. and Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
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Pyysalo, S., Ohta, T., Miwa, M. and Tsujii, J., Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, pages 114--123, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. and Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 26--35, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T. and Tsujii, J., Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, pages 83--88, Association for Computational Linguistics, 2011
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Pyysalo, S., Ohta, T. and Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
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Pyysalo, S., Sætre, R., Tsujii, J. and Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pages 149--152, 2008
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Rak, R. and Ananiadou, S., Making UIMA Truly Interoperable with SPARQL, in: Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, Sofia, Bulgaria, pages 88-97, 2013
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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. and Ananiadou, S., Text Mining-assisted Biocuration Workflows in Argo (2014), in: Database: The Journal of Biological Databases and Curation
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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. and Ananiadou, S., Customisable Curation Workflows in Argo, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, pages 270-278, 2013
Rak, R., Batista-Navarro, R., Rowley, A., Miwa, M., Carter, J. and Ananiadou, S., NaCTeM’s BioC Modules and Resources for BioCreative IV, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, pages 61-67, 2013
Rak, R., Kolluru, B. and Ananiadou, S., Building trainable taggers in a web-based, UIMA-supported NLP workbench, in: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (ACL 2012), pages 121-126, 2012
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Rak, R., Rowley, A. and Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pages 2971-2976, 2012
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