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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. und Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 26--35, Association for Computational Linguistics, 2011

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Pyysalo, S., Ohta, T. und Tsujii, J., Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, Seiten 83--88, Association for Computational Linguistics, 2011

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Pyysalo, S., Ohta, T. und Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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Pyysalo, S., SÃ¦tre, R., Tsujii, J. und Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Seiten 149--152, 2008

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Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. und Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, Seiten 100-108, 2012

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Raitano, G., Benfenati, E., Ananiadou, S., Nguyen, N. T. H., Do, Q. T., Rat, P. und Sousselier, L., Role of in silico tools and text mining in the safety assessment of selected plant coumarins (2017), in: Toxicology Letters, 280:Supplement 1(S96)

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Rak, R. und Ananiadou, S., Making UIMA Truly Interoperable with SPARQL, in: Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, Sofia, Bulgaria, Seiten 88-97, 2013

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Rak, R., Batista-Navarro, R., Carter, J., Rowley, A. und Ananiadou, S., Processing Biological Literature with Customisable Web Services Supporting Interoperable Formats (2014), in: Database: The Journal of Biological Databases and Curation

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. und Ananiadou, S., Text Mining-assisted Biocuration Workflows in Argo (2014), in: Database: The Journal of Biological Databases and Curation

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Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. und Ananiadou, S., Customisable Curation Workflows in Argo, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 270-278, 2013

Rak, R., Batista-Navarro, R., Rowley, A., Miwa, M., Carter, J. und Ananiadou, S., NaCTeMâ€™s BioC Modules and Resources for BioCreative IV, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 61-67, 2013

Rak, R., Kolluru, B. und Ananiadou, S., Building trainable taggers in a web-based, UIMA-supported NLP workbench, in: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (ACL 2012), Seiten 121-126, 2012

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Rak, R., Rowley, A. und Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 2971-2976, 2012

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Rak, R., Rowley, A., Black, W.J. und Ananiadou, S., Argo: an integrative, interactive, text mining-based workbench supporting curation (2012), in: Database: The Journal of Biological Databases and Curation, 2012

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Rak, R., Rowley, A., Carter, J. und Ananiadou, S., Development and Analysis of NLP Pipelines in Argo, in: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics: System Demonstrations, Association for Computational Linguistics, Sofia, Bulgaria, Seiten 115-120, 2013

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Rak, R., Rowley, A., Carter, J., Batista-Navarro, R. und Ananiadou, S., Interoperability and Customisation of Annotation Schemata in Argo, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, Seiten 3837-3842, European Language Resources Association (ELRA), 2014

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Rea, B. und Ananiadou, S., Text Mining Services to Support E-Research, in: UK e-Science All Hands Meeting, 2007

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Rebholz-Schuhmann, D., Pezik, P., Lee, V., Kim, J-J., del Gratta, R., Sasaki, Y., McNaught, J., Montemagni, S., Monachini, M., Calzolari, N. und Ananiadou, S., BioLexicon: Towards a Reference Terminological Resource in the Biomedical Domain, in: Proceedings of the of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB-2008), 2008

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Rehm, G., Uszkoreit, H., Ananiadou, S., Bel, N., Bieleviciene, A., Borin, L., Branco, A., Budin, G., Calzolari, N., Daelemans, W., Garabik, R., Grobelnik, M., Garcia-Mateo, C., Van Genabith, J., Hajic, J., Hernaez, I., Judge, J., Koeva, S., Krek, S., Krstev, C., Linden, K., Magnini, B., Mariani, J., McNaught, J., Melero, M., Monachini, M., Moreno, A., Odijk, J., Ogrodniczuk, M., Pezik, P., Piperidis, S., Przepiorkowski, A., Rognvaldsson, E., Rosner, M., Pedersen, B., Skadina, I., De Smedt, K., Tadic, M., Thompson, P., Tufis, D., Varadi, T., Vasiljevs, A., Vider, K. und Zabarskaite, J., The strategic impact of META-NET on the regional, national and international level (2016), in: Language Resources and Evaluation, 50:2(351-374)

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Rehm, G., Uszkoreit, H., Ananiadou, S., Bel, N., Bieleviciene, A., Borin, L., Branco, A., Budin, G., Calzolari, N., Daelemans, W., Garabik, R., Grobelnik, M., Garcia-Mateo, C., Van Genabith, J., Hajic, J., Hernaez, I., Judge, J., Koeva, S., Krek, S., Krstev, C., Linden, K., Magnini, B., Mariani, J., McNaught, J., Melero, M., Monachini, M., Moreno, A., Odijk, J., Ogrodniczuk, M., Pezik, P., Piperidis, S., Przepiorkowski, A., Rognvaldsson, E., Rosner, M., Pedersen, B., Skadina, I., De Smedt, K., Tadic, M., Thompson, P., Tufis, D., Varadi, T., Vasiljevs, A., Vider, K. und Zabarskaite, J., The Strategic Impact of META-NET on the Regional, National and International Level, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Seiten 1517-1524, European Language Resources Association, 2014

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Restificar, A., Korkontzelos, I. und Ananiadou, S., A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data (2013), in: BMC Medical Informatics and Decision Making, 13:Suppl 1(S6)

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Rice, S., NenadiÄ‡, G. und Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

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Riedel, S., SÃ¦tre, R., Chun, H.-W., Takagi, T. und Tsujii, J., Bio-Molecular Event Extraction with Markov Logic (2011), in: Computational Intelligence, 27:4(558-582)

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