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Kazama, J. und Tsujii, J., Maximum Entropy Models with Inequality Constraints: A case study on text categorization (2005), in: Machine Learning, 60:1-3(169-194)

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NenadiÄ‡, G., SpasiÄ‡, I. und Ananiadou, S., Mining Biomedical Abstracts: Whatâ€™s in a Term?, in: Natural Language Processing â€“ IJCNLP 2004, Springer-Verlag, 2005

Rice, S., NenadiÄ‡, G. und Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

Matsuzaki, T., Miyao, Y. und Tsujii, J., Probabilistic CFG with Latent Annotations, in: Proceedings of ACL 2005, Seiten 75--82, 2005

Miyao, Y. und Tsujii, J., Probabilistic disambiguation models for wide-coverage HPSG parsing, in: Proceedings of ACL 2005, Seiten 83--90, 2005

SpasiÄ‡, I., Ananiadou, S., McNaught, J. und Kumar, A., Text mining and ontologies in biomedicine: making sense of raw text. (2005), in: Briefings in Bioinformatics, 6:3(239--251)

Ananiadou, S., Chruszcz, J., Keane, J., McNaught, J. und Watry, P., The National Centre for Text Mining: Aims and Objectives (2005), in: Ariadne, 42

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Tsujii, J. und Ananiadou, S., Thesaurus or Logical Ontology, Which One Do We Need for Text Mining? (2005), in: Language Resources and Evaluation, 39:1(77-90)

Nakanishi, H., Miyao, Y. und Tsujii, J., An Empirical Investigation of the Effect of Lexical Rules on Parsing with a Treebank Grammar, in: Proceedings of The Third Workshop on Treebanks and Lingustic Theories (TLT 2004), Seiten 103--114, 2004

NenadiÄ‡, G., SpasiÄ‡, I. und Ananiadou, S., Automatic Discovery of Term Similarities Using Pattern Mining (2004), in: International Journal of Terminology, 10:1(55-80)

Chun, H.-W., Ohta, T., Kim, J.-D. und Tsujii, J., Building Patterns for Biomedical Event Extraction, in: Proceedings of the 15th International conference on Genome Informatics (GIW), Seiten 163--164, 2004

Miyao, Y. und Tsujii, J., Deep Linguistic Analysis for the Accurate Identification of Predicate-Argument Relations, in: Proceedings of COLING 2004, Seiten 1392-1397, 2004

NenadiÄ‡, G., Ananiadou, S. und McNaught, J., Enhancing automatic term recognition through recognition of variation, in: Proceedings of COLING 2004, Seiten 604--610, Association for Computational Linguistics, 2004

Tsuruoka, Y. und Tsujii, J., Improving the Performance of Dictionary-based Approaches in Protein Name Recognition (2004), in: Journal of Biomedical Informatics, 37:6(461-470)

Kim, J.-D., Ohta, T., Tsuruoka, Y., Tateisi, Y. und Collier, N., Introduction to the Bio-Entity Recognition Task at JNLPBA, in: Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA-04), Seiten 70--75, 2004

Ananiadou, S., Friedman, C. und Tsujii, J., Introduction: named entity recognition in biomedicine (2004), in: Journal of Biomedical Informatics, 37:6(393--395)

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SpasiÄ‡, I., NenadiÄ‡, G. und Ananiadou, S., Learning to Classify Biomedical Terms through Literature Mining and Genetic Algorithms, in: Intelligent Data Engineering and Automated Learning â€“ IDEAL 2004, Seiten 345--351, Springer-Verlag, 2004

Tateisi, Y. und Tsujii, J., Part-of-Speech Annotation of Biology Research Abstracts, in: Proceedings of 4th International Conference on Language Resources and Evaluation (LREC 2004), Seiten 1267-1270, 2004

Krauthammer, M. und NenadiÄ‡, G., Term identification in the biomedical literature (2004), in: Journal of Biomedical Informatics, 37:6(512--526)

Tsuruoka, Y., Miyao, Y. und Tsujii, J., Towards efficient probabilistic HPSG parsing: integrating semantic and syntactic preference to guide the parsing, in: Proceedings of IJCNLP-04 Workshop: Beyond shallow analyses - Formalisms and statistical modeling for deep analyses, 2004

SpasiÄ‡, I. und Ananiadou, S., Using automatically learnt verb selectional preferences for classification of biomedical terms (2004), in: Journal of Biomedical Informatics, 37:6(483--497)

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