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| Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Biological Event Recognition with Textual Induction, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), páginas 91--96, 2009
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| Matsuoka, Y., Ghosh, S., Kikuchi, N., Sætre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. and Kitano, H., Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, páginas 139-140, Stanford University, 2009
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| Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. and Tsujii, J., Overview of BioNLP'09 Shared Task on Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, páginas 1--9, 2009
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| Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. and Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, páginas 106--107, 2009
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| Sætre, R., Miwa, M., Yoshida, K. and Tsujii, J., From Protein-Protein Interaction to Molecular Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, páginas 103--106, 2009
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| Pyysalo, S., Ohta, T., Kim, J.-D. and Tsujii, J., Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, páginas 1--9, 2009
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| Sun, X., Matsuzaki, T., Okanohara, D. and Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), páginas 1236--1242, 2009
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| Sun, X., Zhang, Y., Matsuzaki, T., Tsuruoka, Y. and Tsujii, J., A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information, in: Proceedings of NAACL-HLT'09, páginas 56--64, 2009
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| Cho, H. -C., Lee, D. -G., Lee, J. -T., Stenetorp, P., Tsujii, J. and Rim, H. -C., A Novel Word Segmentation Approach for Written Languages with Word Boundary Markers, in: Proceedings of ACL-IJCNLP Short Papers, páginas 29--32, 2009
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| Miwa, M., Sætre, R., Miyao, Y. and Tsujii, J., A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora, in: Proceedings of EMNLP 2009, páginas 121--130, 2009
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| Miyao, Y., Sagae, K., Sætre, R., Matsuzaki, T. and Tsujii, J., Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction (2009), in: Bioinformatics, 25:3(394-400)
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| Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. and Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), páginas 34--48, 2009
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| Piao, S., Rea, B., McNaught, J. and Ananiadou, S., Improving Full Text Search With Text Mining Tools, in: Proceedings of the 14th International Conference on Applications of Natural Language to Information Systems, páginas 301-302, 2009
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