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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 26--35, Association for Computational Linguistics, 2011

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Ohta, T., Pyysalo, S., Ananiadou, S. und Tsujii, J., Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Thompson, P., Kano, Y., McNaught, J., Pettifer, S., Attwood, T. K., Keane, J. und Ananiadou, S., Promoting Interoperability of Resources in META-SHARE, in: Proceedings of the IJCNLP Workshop on Language Resources, Technology and Services in the Sharing Paradigm (LRTS), Seiten 50-58, 2011

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Stenetorp, P., Pyysalo, S. und Tsujii, J., SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation, in: Proceedings of the BioNLP 2011 Workshop, Seiten 136-145, Association for Computational Linguistics, 2011

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Korkontzelos, I., Mu, T., Restificar, A. und Ananiadou, S., Text mining for efficient search and assisted creation of clinical trials, in: Proceedings of the ACM Fourth International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO 2011), 2011

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Thompson, P., McNaught, J., Montemagni, S., Calzolari, N., del Gratta, R., Lee, V., Marchi, S., Monachini, M., Pezik, P., Quochi, V., Rupp, C. J., Sasaki, Y., Venturi, G., Rebholz-Schuhmann, D. und Ananiadou, S., The BioLexicon: a large-scale terminological resource for biomedical text mining (2011), in: BMC Bioinformatics, 12(397)

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Krallinger, M., Vazquez, M., Leitner, F., Salgado, D., Chatr-aryamontri, A., Winter, A., Perfetto, L., Briganti, L., Licata, L., Iannuccelli, M., Castagnoli, L., Cesareni, G., Tyers, M., Schneider, G., Rinaldi, F., Leaman, R., Gonzalez, G., Matos, S., Kim, S., Wilbur, W., Rocha, L., Shatkay, H., Tendulkar, A., Agarwal, S., Liu, F., Wang, X., Rak, R., Noto, K., Elkan, C. und Lu, Z., The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text (2011), in: BMC Bioinformatics, 12:Suppl 8(S3)

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Pyysalo, S., Ohta, T., Miwa, M. und Tsujii, J., Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, Seiten 114--123, Association for Computational Linguistics, 2011

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Ananiadou, S., Thompson, P., Kano, Y., McNaught, J., Attwood, T. K., Day, P. J. R., Keane, J., Jackson, D. und Pettifer, S., Towards Interoperability of European Language Resources (2011), in: Ariadne, 67

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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. und Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Kano, Y., Miwa, M., Cohen, K. B., Hunter, L., Ananiadou, S. und Tsujii, J., U-Compare: a modular NLP workflow construction and evaluation system (2011), in: IBM Journal of Research and Development, 55:3(11:1 - 11:10)

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Kolluru, B., Hawizy, L., Murray-Rust, P., Tsujii, J. und Ananiadou, S., Using Workflows to Explore and Optimise Named Entity Recognition for Chemistry (2011), in: PLoS ONE, 6:5(e20181)

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Miwa, M., Pyysalo, S., Hara, T. und Tsujii, J., A Comparative Study of Syntactic Parsers for Event Extraction, in: Proceedings of BioNLP 2010, ACL., Seiten 37--45, 2010

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Hanaoka, H., Mima, H. und Tsujii, J., A Japanese Particle Corpus Built by Example-Based Annotation, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC2010), Seiten 1876--1880, 2010

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Ohta, T., Pyysalo, S., Kim, J.-D. und Tsujii, J., A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928)

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Zhang, Y., Matsuzaki, T. und Tsujii, J., A Simple Approach for HPSG Supertagging Using Dependency Information, in: Proceedings of NAACL-HLT 2010, 2010

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Rupp, C. J., Thompson, P., Black, W.J., McNaught, J. und Ananiadou, S., A Specialised Verb Lexicon as the Basis of Fact Extraction in the Biomedical Domain, in: Proceedings of Interdisciplinary Workshop on Verbs: The Identification and Representation of Verb Features (Verb 2010), 2010

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Wang, X. und Ananiadou, S., A Task-Oriented Extension of the Chinese MeSH Concepts Hierarchy, in: Proceedings of the Second Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM), LREC 2010, Seiten 23--30, 2010

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Pyysalo, S., Ohta, T. und Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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Okazaki, N., Ananiadou, S. und Tsujii, J., Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation (2010), in: Bioinformatics, 26:9(1246-1253)

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Yu, K., Miyao, Y., Matsuzaki, T., Wang, X., Zhang, Y., Uchimoto, K. und Tsujii, J., Comparison of Chinese Treebanks for Corpus-oriented HPSG Grammar Development (2010), in: Journal of Natural Language Processing (Special Issue on Empirical Methods for Asian Language Processing)

BjÃ¶rne, J., Ginter, F., Pyysalo, S., Tsujii, J. und Salakoski, T., Complex event extraction at PubMed scale (2010), in: Bioinformatics, 26:12(i382-i390)

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Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. und Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, Seiten 214--221, IEEE Computer Society, 2010

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Wang, X., Tsujii, J. und Ananiadou, S., Disambiguating the Species of Biomedical Named Entities Using Natural Language Parsers (2010), in: Bioinformatics, 26:5(661--667)

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Miwa, M., Miyao, Y., SÃ¦tre, R. und Tsujii, J., Entity-Focused Sentence Simplification for Relation Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), Seiten 788-796, 2010

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