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Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. und Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 102-107, Association for Computational Linguistics, 2012

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Stenetorp, P., Pyysalo, S., Ohta, T., Ananiadou, S. und Tsujii, J., Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, Seiten 47-56, 2012

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Rak, R., Kolluru, B. und Ananiadou, S., Building trainable taggers in a web-based, UIMA-supported NLP workbench, in: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (ACL 2012), Seiten 121-126, 2012

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Rak, R., Rowley, A. und Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 2971-2976, 2012

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Kontonatsios, G., Korkontzelos, I. und Ananiadou, S., Developing Multilingual Text Mining Workflows in UIMA and U-Compare, in: Proceedings of the 17th International conference on Applications of Natural Language Processing to Information Systems, Groningen, Netherlands, Seiten 82 - 93, Springer, 2012

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Sutcliffe, A., de Bruijn, O., Thew, S., Buchan, I., Jarvis, P., McNaught, J. und Procter, R., Developing visualization-based decision support tools for epidemiology (2012), in: Information Visualization

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Mu, T., Miwa, M., Tsujii, J. und Ananiadou, S., Discovering Robust Embeddings in (Dis)Similarity Space for High-Dimensional Lingustic Features (2012), in: Computatational Intelligence

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Pyysalo, S., Ohta, T., Miwa, M., Cho, H. -C., Tsujii, J. und Ananiadou, S., Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581)

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Miwa, M., Thompson, P., McNaught, J., Kell, D. B. und Ananiadou, S., Extracting semantically enriched events from biomedical literature (2012), in: BMC Bioinformatics, 13(108)

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Nawaz, R., Thompson, P. und Ananiadou, S., Identification of Manner in Bio-Events, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 3505-3510, 2012

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Nawaz, R., Thompson, P. und Ananiadou, S., Meta-Knowledge Annotation at the Event Level: Comparison between Abstracts and Full Papers, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), Seiten 24-31, 2012

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Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. und Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, Seiten 100-108, 2012

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Ohta, T., Pyysalo, S., Tsujii, J. und Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), Seiten 27-36, 2012

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Mu, T., Goulermas, J. Y, Tsujii, J. und Ananiadou, S., Proximity-based Frameworks for Generating Embeddings from Multi-Output Data (2012), in: IEEE Transactions on Pattern Analysis and Machine Intelligence

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BjÃ¶rne, J., Van Landeghem, S., Pyysalo, S., Ohta, T., Ginter, F., Van de Peer, Y., Ananiadou, S. und Salakoski, T., PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations, in: Proceedings of BioNLP 2012, Seiten 82-90, 2012

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Selected articles from the BioNLP Shared Task 2011, 2012

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Ananiadou, S., Ohta, T. und Rutter, M., Text Mining supporting Search for Knowledge Discovery in Diabetes (2012), in: Current Cardiovascular Risk Reports

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Ananiadou, S., McNaught, J. und Thompson, P., The English Language in the Digital Age, in: White Paper Series, Springer, 2012

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MihÄƒilÄƒ, C. und Batista-Navarro, R., What's in a Name? Entity Type Variation across Two Biomedical Subdomains, in: Proceedings of the Student Research Workshop at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 38-45, Association for Computational Linguistics, 2012

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Iwasawa, S., Hanaoka, H., Matsuzaki, T., Miyao, Y. und Tsujii, J., A Collaborative Annotation between Human Annotators and a Statistical Parser, in: Proceedings of the 5th Linguistic Annotation Workshop, Seiten 56--64, Association for Computational Linguistics, 2011

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Batista-Navarro, R. und Ananiadou, S., Adapting the Cluster Ranking Supervised Model to Resolve Coreferences in the Drug Literature, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

Kontonatsios, G., Korkontzelos, I., Kolluru, B. und Ananiadou, S., Adding Text Mining Workflows as Web Services to the BioCatalogue, in: Proceedings of the 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS)., 2011

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Kocbek, S., SÃ¦tre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. und Tsujii, J., AGRA: Analysis of Gene Ranking Algorithms (2011), in: Bioinformatics, 27:8(1185-1186)

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Stenetorp, P., Pyysalo, S., Ananiadou, S. und Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)

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