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Thompson, P., Iqbal, S. A., McNaught, J. und Ananiadou, S., Construction of an annotated corpus to support biomedical information extraction (2009), in: BMC Bioinformatics, 10(349)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S. und Tsujii, J., Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403)

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Tsuruoka, Y., Tsujii, J. und Ananiadou, S., Accelerating the annotation of sparse named entities by dynamic sentence selection (2008), in: BMC Bioinformatics, 9:Suppl 11(S8)

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Kim, J.-D., Ohta, T. und Tsujii, J., Corpus annotation for mining biomedical events from literature (2008), in: BMC Bioinformatics, 9:1(10)

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Wang, X. und Matthews, M., Distinguishing the species of biomedical named entities for term identification (2008), in: BMC Bioinformatics, 9:Suppl 11(S6)

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Sasaki, Y., Tsuruoka, Y., McNaught, J. und Ananiadou, S., How to make the most of NE dictionaries in statistical NER (2008), in: BMC Bioinformatics, 9:Suppl 11(S5)

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Oda, K., Kim, J.-D., Ohta, T., Okanohara, D., Matsuzaki, T., Tateisi, Y. und Tsujii, J., New challenges for text mining: Mapping between text and manually curated pathways (2008), in: BMC Bioinformatics, 9:Suppl 3(S5)

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Tsuruoka, Y., McNaught, J. und Ananiadou, S., Normalizing biomedical terms by minimizing ambiguity and variability (2008), in: BMC Bioinformatics, 9:Suppl 3(S2)

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Rice, S., NenadiÄ‡, G. und Stapley, B., Mining protein function from text using term-based support vector machines (2005), in: BMC Bioinformatics, 6:Suppl 1(S22)

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Brockmeier, A. J., Ju., M., Przybyɫa, P. und Ananiadou, S., Improving reference prioritisation with PICO recognition (2019), in: BMC Medical Informatics and Decision Making, 19(256)

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Shardlow, M., Batista-Navarro, R., Thompson, P., Nawaz, R., McNaught, J. und Ananiadou, S., Identification of Research Hypotheses and New Knowledge from Scientific Literature (2018), in: BMC Medical Informatics and Decision Making, 18(46)

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Alnazzawi, N., Thompson, P., Batista-Navarro, R. und Ananiadou, S., Using text mining techniques to extract phenotypic information from the PhenoCHF corpus (2015), in: BMC Medical Informatics and Decision Making, 15:Suppl. 2(S3)

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Restificar, A., Korkontzelos, I. und Ananiadou, S., A method for discovering and inferring appropriate eligibility criteria in clinical trial protocols without labeled data (2013), in: BMC Medical Informatics and Decision Making, 13:Suppl 1(S6)

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Korkontzelos, I., Mu, T. und Ananiadou, S., ASCOT: a text mining-based web-service for efficient search and assisted creation of clinical trials (2012), in: BMC Medical Informatics and Decision Making, 12:Suppl 1(S3)

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Husain, N, Chaudhry, I. B., Taylor, P., Ananiadou, S., Aseem, S., Green, J. und Poppleton, A., Youth Culturally adapted Manual Assisted Problem Solving Training (YCMAP) in Pakistani adolescent with a history of self harm: Protocol for multi-centre clinical and cost effectiveness randomised controlled trial (2022), in: BMJ Open, 12(e056301)

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Hamulyak, E. N., Brockmeier, A. J., Killas, J. D., Ananiadou, S., Middeldorp, S. und Leroi, A. M., Women’s health in The BMJ: a data science history (2020), in: BMJ Open, 10(e039759)

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SpasiÄ‡, I., Ananiadou, S., McNaught, J. und Kumar, A., Text mining and ontologies in biomedicine: making sense of raw text. (2005), in: Briefings in Bioinformatics, 6:3(239--251)

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Ananiadou, S., Thompson, P., Nawaz, R., McNaught, J. und Kell, D. B., Event Based Text Mining for Biology and Functional Genomics (2014), in: Briefings in Functional Genomics, 14:3(213-230)

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Bahor, Z., Liao, J., Macleod, M. R., Bannach-Brown, A., McCann, S. K., Wever, K. E., Thomas, J., Ottavi, T., Howells, D. W., Rice, A., Ananiadou, S. und Sena, E., Risk of bias reporting in the recent animal focal cerebral ischaemia literature (2017), in: Clinical Science, 131:20(2525--2532)

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Mu, T., Miwa, M., Tsujii, J. und Ananiadou, S., Discovering Robust Embeddings in (Dis)Similarity Space for High-Dimensional Lingustic Features (2012), in: Computatational Intelligence

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Riedel, S., SÃ¦tre, R., Chun, H.-W., Takagi, T. und Tsujii, J., Bio-Molecular Event Extraction with Markov Logic (2011), in: Computational Intelligence, 27:4(558-582)

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Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. und Tsujii, J., Extracting Bio-Molecular Events From Literatureâ€”The BioNLPâ€™09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540)

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Sasaki, Y., Wang, X. und Ananiadou, S., Extracting Secondary Bio-Event Arguments with Extraction Constraints (2011), in: Computational Intelligence, 27:4(702-721)

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Tsujii, J., Natural Language Processing and Computational Linguistics (2021), in: Computational Linguistics, 47:4(707-727)

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Miyao, Y. und Tsujii, J., Feature Forest Models for Probabilistic HPSG Parsing (2008), in: Computational Linguistics, 34:1(35â€“80)

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