All publications sorted by journal and type


Publications of type Inproceedings


2010

Pyysalo, S., Ohta, T. and Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
[URL]
Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. and Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, pages 214--221, IEEE Computer Society, 2010
[DOI]
Miwa, M., Miyao, Y., Sætre, R. and Tsujii, J., Entity-Focused Sentence Simplification for Relation Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pages 788-796, 2010
[URL]
Nawaz, R., Thompson, P. and Ananiadou, S., Evaluating a meta-knowledge annotation scheme for bio-events, in: Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, pages 69--77, 2010
[URL]
Ananiadou, S., McNaught, J., Thomas, J. and Oliver, S., Evaluating a text mining based educational search portal, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pages 3344--3350, 2010
[URL]
Miwa, M., Pyysalo, S., Hara, T. and Tsujii, J., Evaluating Dependency Representation for Event Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pages 779-787, 2010
[URL]
Ohta, T., Pyysalo, S., Miwa, M. and Tsujii, J., Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010
[URL]
Ohta, T., Pyysalo, S., Miwa, M., Kim, J.-D. and Tsujii, J., Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, pages 19--27, Association for Computational Linguistics, 2010
[URL]
Nawaz, R., Thompson, P. and Ananiadou, S., Event Interpretation: A Step towards Event-Centred Text Mining, in: Proceedings of the 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop, 2010
attachment
Wu, X., Matsuzaki, T. and Tsujii, J., Fine-grained Tree-to-String Translation Rule Extraction, in: Proceedings of The 48th Annual Meeting of the Association for Computational Linguistics (ACL 2010), pages 325--334, 2010
[URL]
Mu, T., Wang, X., Tsujii, J. and Ananiadou, S., Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pages 851-859, 2010
[URL]
Ananiadou, S., Thompson, P. and Nawaz, R., Improving Search Through Event-based Biomedical Text Mining, in: Proceedings of the 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop, 2010
attachment
Nawaz, R., Thompson, P., McNaught, J. and Ananiadou, S., Meta-Knowledge Annotation of Bio-Events, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pages 2498--2505, 2010
[URL]
Wang, X., Rak, R., Restificar, A., Nobata, C., Rupp, C. J., Batista-Navarro, R., Nawaz, R. and Ananiadou, S., NaCTeM Systems for BioCreative III PPI Tasks, in: Proceedings of the BioCreative III Workshop, pages 142-147, 2010
[URL]
Mu, T. and Ananiadou, S., Proximity-based graph embeddings for multi-label classification, in: Proceedings of the International Conference on Knowledge Discovery and Information Retrieval (KDIR 2010), 2010
[URL]
Kano, Y., Dorado, R., McCrochon, L., Ananiadou, S. and Tsujii, J., U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pages 428--434, 2010
[URL]

2009

Matsubayashi, Y., Okazaki, N. and Tsujii, J., Accurate and Robust Semantic Role Labeling using Multiple Generalization Criteria in PropBank, in: Proceedings of the 5th International Conference on Generative Approaches to the Lexicon, pages 97--104, 2009
Sætre, R., Kazuhiro, Y., Miwa, M., Matsuzaki, T., Kano, Y. and Tsujii, J., AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge, in: BioCreative II.5 Workshop 2009 special session | Digital Annotations, pages 33, CNIO, 2009
[URL]
Barrón-Cedeño, A., Sierra, G. E., Drouin, P. and Ananiadou, S., An Improved Automatic Term Recognition method for Spanish, in: Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009), Mexico City, Mexico, pages 125--136, Springer, 2009
[URL]