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All publications sorted by journal and type


Publications of type Inproceedings


2013

Kontonatsios, G., Korkontzelos, I., Tsujii, J. and Ananiadou, S., Using Random Forest to recognise translation equivalents of biomedical terms across languages, in: Proceedings of the Sixth Workshop on Building and Using Comparable Corpora, Sofia, Bulgaria, pages 95-104, Association for Computational Linguistics, 2013
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Mihăilă, C. and Ananiadou, S., What causes a causal relation? Detecting causal triggers in biomedical scientific discourse, in: 51st Annual Meeting of the Association for Computational Linguistics Proceedings of the Student Research Workshop, Sofia, Bulgaria, pages 38-45, Association for Computational Linguistics, 2013
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2012

Black, W.J., Procter, R., Gray, S. and Ananiadou, S., A data and analysis resource for an experiment in text mining a collection of micro-­blogs on a political topic, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pages 2083-2088, 2012
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Liakata, M., Thompson, P., de Waard, A., Nawaz, R., Pander Maat, H. and Ananiadou, S., A three-way perspective on scientific discourse annotation for knowledge extraction, in: Proceedings of the ACL Workshop on Detecting Structure in Scholarly Discourse (DSSD), pages 37-46, 2012
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Mihăilă, C., Batista-Navarro, R. and Ananiadou, S., Analysing Entity Type Variation across Biomedical Subdomains, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), Istanbul, Turkey, pages 1-7, 2012
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Wang, X., Thompson, P. and Ananiadou, S., Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pages 1148-1155, 2012
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Stenetorp, P., Pyysalo, S., Topić, G., Ohta, T., Ananiadou, S. and Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pages 102-107, Association for Computational Linguistics, 2012
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Rak, R., Kolluru, B. and Ananiadou, S., Building trainable taggers in a web-based, UIMA-supported NLP workbench, in: Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics (ACL 2012), pages 121-126, 2012
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Rak, R., Rowley, A. and Ananiadou, S., Collaborative Development and Evaluation of Text-processing Workflows in a UIMA-supported Web-based Workbench, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pages 2971-2976, 2012
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Kontonatsios, G., Korkontzelos, I. and Ananiadou, S., Developing Multilingual Text Mining Workflows in UIMA and U-Compare, in: Proceedings of the 17th International conference on Applications of Natural Language Processing to Information Systems, Groningen, Netherlands, pages 82 - 93, Springer, 2012
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Nawaz, R., Thompson, P. and Ananiadou, S., Identification of Manner in Bio-Events, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), pages 3505-3510, 2012
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Nawaz, R., Thompson, P. and Ananiadou, S., Meta-Knowledge Annotation at the Event Level: Comparison between Abstracts and Full Papers, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), pages 24-31, 2012
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Ohta, T., Pyysalo, S., Tsujii, J. and Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pages 27-36, 2012
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Mihăilă, C. and Batista-Navarro, R., What's in a Name? Entity Type Variation across Two Biomedical Subdomains, in: Proceedings of the Student Research Workshop at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pages 38-45, Association for Computational Linguistics, 2012
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2011

Iwasawa, S., Hanaoka, H., Matsuzaki, T., Miyao, Y. and Tsujii, J., A Collaborative Annotation between Human Annotators and a Statistical Parser, in: Proceedings of the 5th Linguistic Annotation Workshop, pages 56--64, Association for Computational Linguistics, 2011
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Batista-Navarro, R. and Ananiadou, S., Adapting the Cluster Ranking Supervised Model to Resolve Coreferences in the Drug Literature, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
Kontonatsios, G., Korkontzelos, I., Kolluru, B. and Ananiadou, S., Adding Text Mining Workflows as Web Services to the BioCatalogue, in: Proceedings of the 4th International Workshop on Semantic Web Aplications and Tools for the Life Sciences (SWAT4LS)., 2011
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Soldatova, L. N., Kolluru, B., King, R. D., Qi, D. and Ananiadou, S., An ontology-based disambiguation of terms, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011
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Kocbek, S., Sætre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. and Tsujii, J., Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from Pubmed publications, in: Proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011
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Pyysalo, S., Ohta, T. and Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011
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Usami, Y., Cho, H. -C., Okazaki, N. and Tsujii, J., Automatic Acquisition of Huge Training Data for Bio-Medical Named Entity Recognition, in: Proceedings of the BioNLP 2011 Workshop, pages 65--73, Association for Computational Linguistics, 2011
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