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Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S., Ohta, T. and Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), páginas 103--108, 2009
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Sagae, K. and Tsujii, J., Dependency parsing and domain adaptation with LR models and parser ensembles, in: Proceedings of the CoNLL 2007 Shared Task in the Joint Conferences on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL'07 shared task), páginas 1044-1050, 2007
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Mu, T., Goulermas, J. Y, Korkontzelos, I. and Ananiadou, S., Descriptive Clustering via Discriminant Learning in a Coembedded Space of Multi-level Similarities (2016), in: Journal of the Association for Information Science and Technology, 67:1(106-133)
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Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. and Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, páginas 214--221, IEEE Computer Society, 2010
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Tsuruoka, Y., Tateisi, Y., Kim, J.-D., Ohta, T., McNaught, J., Ananiadou, S. and Tsujii, J., Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, páginas 382--392, Springer-Verlag, 2005
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Kontonatsios, G., Korkontzelos, I. and Ananiadou, S., Developing Multilingual Text Mining Workflows in UIMA and U-Compare, in: Proceedings of the 17th International conference on Applications of Natural Language Processing to Information Systems, Groningen, Netherlands, páginas 82 - 93, Springer, 2012
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Rak, R., Rowley, A., Carter, J. and Ananiadou, S., Development and Analysis of NLP Pipelines in Argo, in: Proceedings of the 51st Annual Meeting of the Association for Computational Linguistics: System Demonstrations, Association for Computational Linguistics, Sofia, Bulgaria, páginas 115-120, 2013
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Batista-Navarro, R., Carter, J. and Ananiadou, S., Development of bespoke machine learning and biocuration workflows in a BioC-supporting text mining workbench, in: Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, Seville, Spain, páginas 51-56, 2015
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Batista-Navarro, R. and Ananiadou, S., Discovering Potential Drugs by Extracting Biological Activities of Natural Products, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011
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Yang, K, Zhang, T. and Ananiadou, S., Disentangled Variational Autoencoder for Emotion Recognition in Conversations (2023), in: IEEE Transactions on Affective Computing(1-12)
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Miwa, M. and Ananiadou, S., DISTANT: Distantly Supervised Entity Span Detection and Classification, in: Proceedings of BioNLP 2023, páginas 171–177, 2023
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Christopoulou, F., Miwa, M. and Ananiadou, S., Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors, in: Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics - Human Language Technologies (NAACL-HLT), páginas 11-26, 2021
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