Publication list - NaCTeM Publications

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Almeida, B., Ananiadou, S., Bagnato, A., Barbero, A. B., Di Rocco, J., Di Ruscio, D., Kolovos, D. S., Korkontzelos, I., Hansen, S., Malo, P., Matragkas, N., Paige, R. F. and Vinju, J., OSSMETER: Automated Measurement and Analysis of Open Source Software, in: Proceedings of the Projects Showcase at the Software Technologies: Applications and Foundations 2015 (STAF 2015), 2015

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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. and Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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Thompson, P., Carter, J., McNaught, J. and Ananiadou, S., Semantically Enhanced Search System for Historical Medical Archives, in: Proceedings of DigitalHeritage 2015, pages 387 - 390, 2015

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Batista-Navarro, R., Carter, J. and Ananiadou, S., Semi-automatic curation of chronic obstructive pulmonary disease phenotypes using Argo, in: Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, Seville, Spain, pages 403-408, 2015

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Mo, Y., Kontonatsios, G. and Ananiadou, S., Supporting Systematic Reviews Using LDA-based Document Representations (2015), in: Systematic Reviews, 4(172)

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O'Mara-Eves, A., Thomas, J., McNaught, J., Miwa, M. and Ananiadou, S., Using text mining for study identification in systematic reviews: A systematic review of current approaches (2015), in: Systematic Reviews, 4:1

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Alnazzawi, N., Thompson, P., Batista-Navarro, R. and Ananiadou, S., Using text mining techniques to extract phenotypic information from the PhenoCHF corpus (2015), in: BMC Medical Informatics and Decision Making, 15:Suppl. 2(S3)

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Kontonatsios, G., MihÄƒilÄƒ, C., Korkontzelos, I., Thompson, P. and Ananiadou, S., A hybrid approach to compiling bilingual dictionaries of medical terms from parallel corpora, in: Statistical Language and Speech Processing, Second International Conference, SLSP 2014, pages 57-69, Springer, 2014

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Pyysalo, S. and Ananiadou, S., Anatomical Entity Mention Recognition at Literature Scale (2014), in: Bioinformatics, 30:6(868-875)

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Xu, Y., Hua, J., Ni, Z., Chen, Q., Fan, Y., Ananiadou, S., Chang, E. I-C. and Tsujii, J., Anatomical entity recognition with a hierarchical framework augmented by external resources (2014), in: PLOS ONE, 9:10(e108396)

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Comeau, Donald C., Batista-Navarro, R., Dai, Hong-Jie, Islamaj DoÄŸan, Rezarta, Jimeno Yepes, Antonio, Khare, Ritu, Lu, Zhiyong, Marques, Hernani, Mattingly, Carolyn J., Neves, M., Peng, Yifan, Rak, R., Rinaldi, F., Tsai, Richard Tzong-Han, Verspoor, K., Wiegers, Thomas C., Wu, Cathy H. and Wilbur, W., BioC interoperability track overview (2014), in: Database: The Journal of Biological Databases and Curation, 2014

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Alnazzawi, N., Thompson, P. and Ananiadou, S., Building a semantically annotated corpus for congestive heart and renal failure from clinical records and the literature, in: Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis (Louhi), Gothenburg, Sweden, pages 69-74, Association for Computational Linguistics, 2014

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Kontonatsios, G., Korkontzelos, I., Tsujii, J. and Ananiadou, S., Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora, in: Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP), Doha, Qatar, pages 1701-1712, Association for Computational Linguistics, 2014

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Miwa, M., Thompson, P., Korkontzelos, I. and Ananiadou, S., Comparable Study of Event Extraction in Newswire and Biomedical Domains, in: Proceedings of Coling 2014, pages 2270 -2279, 2014

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Sutcliffe, A., de Bruijn, O., Thew, S., Buchan, I., Jarvis, P., McNaught, J. and Procter, R., Developing visualization-based decision support tools for epidemiology (2014), in: Information Visulization, 13:1(3 -17)

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Batista-Navarro, R., Islam, A., Ulate, W., Hammock, J., Soto, A., Ananiadou, S. and Milios, E., Enriching the legacy literature with OCR corrections and text-mined semantic metadata, in: Proceedings of the TDWG 2014 Annual Conference, 2014

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Ananiadou, S., Thompson, P., Nawaz, R., McNaught, J. and Kell, D. B., Event Based Text Mining for Biology and Functional Genomics (2014), in: Briefings in Functional Genomics, 14:3(213-230)

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Rosner, M., Attard, A., Thompson, P., Gatt, A. and Ananiadou, S., Extending a Tool Resource Framework with U-Compare, in: Human Language Technology Challenges for Computer Science and Linguistics, pages 315-326, Springer, 2014

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Stenetorp, P., Pyysalo, S., Ananiadou, S. and Tsujii, J., Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26)

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Rak, R., Rowley, A., Carter, J., Batista-Navarro, R. and Ananiadou, S., Interoperability and Customisation of Annotation Schemata in Argo, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, pages 3837-3842, European Language Resources Association (ELRA), 2014

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Korkontzelos, I. and Ananiadou, S., Locating Requests among Open Source Software Communication Messages, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), Reykjavik, Iceland, pages 1347-1354, European Language Resources Association (ELRA), 2014

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