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Wang, X., Tsujii, J. en Ananiadou, S., Disambiguating the Species of Biomedical Named Entities Using Natural Language Parsers (2010), in: Bioinformatics, 26:5(661--667)

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Kemper, B., Matsuzaki, T., Matsuoka, Y., Tsuruoka, Y., Kitano, H., Ananiadou, S. en Tsujii, J., PathText: A Text Mining Integrator for Biological Pathway Visualizations (2010), in: Bioinformatics, 26:12(i374-i381)

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Kano, Y., Dobson, P., Nakanishi, M., Tsujii, J. en Ananiadou, S., Text Mining Meets Workflow: Linking U-Compare with Taverna (2010), in: Bioinformatics, 26:19(2486-2487)

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Miyao, Y., Sagae, K., SÃ¦tre, R., Matsuzaki, T. en Tsujii, J., Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction (2009), in: Bioinformatics, 25:3(394-400)

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Tsuruoka, Y., Tsujii, J. en Ananiadou, S., FACTA: a text search engine for finding associated biomedical concepts (2008), in: Bioinformatics, 24:21(2259-60)

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Tsuruoka, Y., McNaught, J., Tsujii, J. en Ananiadou, S., Learning string similarity measures for gene/protein name dictionary look-up using logistic regression (2007), in: Bioinformatics, 23:20(2768-2774)

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Okazaki, N. en Ananiadou, S., Building an Abbreviation Dictionary using a Term Recognition Approach (2006), in: Bioinformatics, 22:24(3089-3095)

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SpasiÄ‡, I., Ananiadou, S. en Tsujii, J., MaSTerClass: a case-based reasoning system for the classification of biomedical terms (2005), in: Bioinformatics, 21:11(2748--2758)

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MihÄƒilÄƒ, C. en Ananiadou, S., Semi-supervised learning of causal relations in biomedical scientific discourse (2014), in: BioMedical Engineering OnLine, 13:Suppl 2(S1)

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Espinosa, K., Georgiadis, P., Christopoulou, F., Ju., M., Miwa, M. en Ananiadou, S., Comparing neural models for nested and overlapping biomedical event detection (2022), in: BMC Bioinformatics, 23(211)

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Wang, Y., Fan, X., Chen, L., Chang, E. I-C., Ananiadou, S., Tsujii, J. en Xu, Y., Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries (2019), in: BMC Bioinformatics, 20(430)

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Miwa, M. en Ananiadou, S., Adaptable, high recall, event extraction system with minimal configuration (2015), in: BMC Bioinformatics, 16:Suppl 10.(S7)

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Xu, Y., Chen, L., Wei, J., Ananiadou, S., Fan, Y., Qian, Y., Chang, E. I-C. en Tsujii, J., Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary (2015), in: BMC Bioinformatics, 16(149)

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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. en Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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MihÄƒilÄƒ, C., Ohta, T., Pyysalo, S. en Ananiadou, S., BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2)

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Nawaz, R., Thompson, P. en Ananiadou, S., Negated BioEvents: Analysis and Identification (2013), in: BMC Bioinformatics, 14:1(14)

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Miwa, M., Pyysalo, S., Ohta, T. en Ananiadou, S., Wide coverage biomedical event extraction using multiple partially overlapping corpora (2013), in: BMC Bioinformatics, 14:175

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Miwa, M., Thompson, P., McNaught, J., Kell, D. B. en Ananiadou, S., Extracting semantically enriched events from biomedical literature (2012), in: BMC Bioinformatics, 13(108)

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. en Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Wang, X., Rak, R., Restificar, A., Nobata, C., Rupp, C. J., Batista-Navarro, R., Nawaz, R. en Ananiadou, S., Detecting Experimental Techniques and Selecting Relevant Documents for Protein-Protein Interactions from Biomedical Literature (2011), in: BMC Bioinformatics, 12:Suppl 8(S11)

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Thompson, P., Nawaz, R., McNaught, J. en Ananiadou, S., Enriching a biomedical event corpus with meta-knowledge annotation (2011), in: BMC Bioinformatics, 12(393)

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Thompson, P., McNaught, J., Montemagni, S., Calzolari, N., del Gratta, R., Lee, V., Marchi, S., Monachini, M., Pezik, P., Quochi, V., Rupp, C. J., Sasaki, Y., Venturi, G., Rebholz-Schuhmann, D. en Ananiadou, S., The BioLexicon: a large-scale terminological resource for biomedical text mining (2011), in: BMC Bioinformatics, 12(397)

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Krallinger, M., Vazquez, M., Leitner, F., Salgado, D., Chatr-aryamontri, A., Winter, A., Perfetto, L., Briganti, L., Licata, L., Iannuccelli, M., Castagnoli, L., Cesareni, G., Tyers, M., Schneider, G., Rinaldi, F., Leaman, R., Gonzalez, G., Matos, S., Kim, S., Wilbur, W., Rocha, L., Shatkay, H., Tendulkar, A., Agarwal, S., Liu, F., Wang, X., Rak, R., Noto, K., Elkan, C. en Lu, Z., The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text (2011), in: BMC Bioinformatics, 12:Suppl 8(S3)

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Kano, Y., BjÃ¶rne, J., Ginter, F., Salakoski, T., Buyko, E., Hahn, U., Cohen, K. B., Verspoor, K., Roeder, C., Hunter, L., Kilicoglu, H., Bergler, S., Van Landeghem, S., Van Parys, T., Van de Peer, Y., Miwa, M., Ananiadou, S., Neves, M., Pascual-Montano, A., Ozgur, A., Radev, D. R., Riedel, S., SÃ¦tre, R., Chun, H.-W., Kim, J.-D., Pyysalo, S., Ohta, T. en Tsujii, J., U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481)

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Ohta, T., Matsuzaki, T., Okazaki, N., Miwa, M., SÃ¦tre, R., Pyysalo, S. en Tsujii, J., Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7)

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