Tsuruoka, Y. - NaCTeM Publications

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Voornamen:	Y.
Achternamen:	Tsuruoka

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Kocbek, S., SÃ¦tre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. en Tsujii, J., AGRA: Analysis of Gene Ranking Algorithms (2011), in: Bioinformatics, 27:8(1185-1186)

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Tsuruoka, Y., Miwa, M., Hamamoto, K., Tsujii, J. en Ananiadou, S., Discovering and visualizing indirect associations between biomedical concepts (2011), in: Bioinformatics, 27:13(i111-i119)

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Kemper, B., Matsuzaki, T., Matsuoka, Y., Tsuruoka, Y., Kitano, H., Ananiadou, S. en Tsujii, J., PathText: A Text Mining Integrator for Biological Pathway Visualizations (2010), in: Bioinformatics, 26:12(i374-i381)

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Tsuruoka, Y., Tsujii, J. en Ananiadou, S., FACTA: a text search engine for finding associated biomedical concepts (2008), in: Bioinformatics, 24:21(2259-60)

Tsuruoka, Y., McNaught, J., Tsujii, J. en Ananiadou, S., Learning string similarity measures for gene/protein name dictionary look-up using logistic regression (2007), in: Bioinformatics, 23:20(2768-2774)

Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Accelerating the annotation of sparse named entities by dynamic sentence selection (2008), in: BMC Bioinformatics, 9:Suppl 11(S8)

Sasaki, Y., Tsuruoka, Y., McNaught, J. en Ananiadou, S., How to make the most of NE dictionaries in statistical NER (2008), in: BMC Bioinformatics, 9:Suppl 11(S5)

Tsuruoka, Y., McNaught, J. en Ananiadou, S., Normalizing biomedical terms by minimizing ambiguity and variability (2008), in: BMC Bioinformatics, 9:Suppl 3(S2)

Tsuruoka, Y. en Tsujii, J., Improving the Performance of Dictionary-based Approaches in Protein Name Recognition (2004), in: Journal of Biomedical Informatics, 37:6(461-470)

Piao, S., Tsuruoka, Y. en Ananiadou, S., Sentiment Analysis with Knowledge Resource and NLP Tools (2009), in: The International Journal of Interdisciplinary Social Sciences, 4:5(17--28)

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Tsuruoka, Y., Tateisi, Y., Kim, J.-D., Ohta, T., McNaught, J., Ananiadou, S. en Tsujii, J., Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, pagina's 382--392, Springer-Verlag, 2005

Tsuruoka, Y. en Tsujii, J., Iterative CKY Parsing for Probabilistic Context-Free Grammars, in: Natural Language Processing - IJCNLP 2004, pagina's 52-60, Springer-Verlag, 2005

Kocbek, S., SÃ¦tre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. en Tsujii, J., Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from Pubmed publications, in: Proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011

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Sun, X., Zhang, Y., Matsuzaki, T., Tsuruoka, Y. en Tsujii, J., A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character Information, in: Proceedings of NAACL-HLT'09, pagina's 56--64, 2009

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Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Fast Full Parsing by Linear-Chain Conditional Random Fields, in: Proceedings of the 12th Conference of European Chapter of the Association for Computational Linguistics (EACL-09), pagina's 790--798, 2009

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Tekiner, F., Ananiadou, S., Tsuruoka, Y. en Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009

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Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty, in: ACL-IJCNLP 2009, pagina's 477--485, 2009

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Okazaki, N., Tsuruoka, Y., Ananiadou, S. en Tsujii, J., A Discriminative Candidate Generator for String Transformations, in: Proceedings of the 2008 Conference on Empirical Methods in Natural Language Processing (EMNLP 2008), pagina's 447-456, 2008

Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Accelerating the Annotation of Sparse Named Entities by Dynamic Sentence Selection, in: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008), pagina's 30--37, Association for Computational Linguistics, 2008

SÃ¦tre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. en Tsujii, J., Connecting Text Mining and Pathways using the PathText Resource, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pagina's 1736-1740, European Language Resources Association (ELRA), 2008

Kano, Y., Nguyen, N. T. H., SÃ¦tre, R., Yoshida, K., Miyao, Y., Tsuruoka, Y., Matsubayashi, Y., Ananiadou, S. en Tsujii, J., Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example., in: Proceedings of the Pacific Symposium on Biocomputing 2008 (PSB 2008), pagina's 616--627, 2008

Sasaki, Y., Tsuruoka, Y., McNaught, J. en Ananiadou, S., How to Make the Most of NE Dictionaries in Statistical NER, in: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008), pagina's 63--70, Association for Computational Linguistics, 2008

Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Kleio: a knowledge-enriched information retrieval system for biology, in: Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval, Singapore, Singapore, pagina's 787--788, ACM, 2008

SÃ¦tre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. en Tsujii, J., PathText: Text Mining Tools Integrated with Biological Pathway, in: Genomes to Systems Conference 2008 Handbook, pagina's 65, The Consortium for Post-Genome Science, 2008

Kano, Y., Nguyen, N. T. H., SÃ¦tre, R., Fukamachi, K., Yoshida, K., Miyao, Y., Tsuruoka, Y., Ananiadou, S. en Tsujii, J., Sharable type system design for tool inter-operability and combinatorial comparison, in: Proceedings of the First International Conference on Global Interoperability for Language Resources (ICGL), pagina's 122--129, 2008

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