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BjÃ¶rne, J., Ginter, F., Pyysalo, S., Tsujii, J. und Salakoski, T., Complex event extraction at PubMed scale (2010), in: Bioinformatics, 26:12(i382-i390)

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Splendiani, A., Piao, S., Sasaki, Y., Ananiadou, S., McNaught, J. und Burgun, A, Compositional Enrichment of Bio-Ontologies, in: Proceedings of 11th Annual Bio-Ontologies Meeting, at the Intelligent Systems for Molecular Biology 2008 Conference (ISMB-2008), 2008

Arase, Y. und Tsujii, J., Compositional Phrase Alignment and Beyond, in: Proceedings of EMNLP 2020, Seiten 1611–1623, 2020

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SÃ¦tre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. und Tsujii, J., Connecting Text Mining and Pathways using the PathText Resource, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), Seiten 1736-1740, European Language Resources Association (ELRA), 2008

Christopoulou, F., Miwa, M. und Ananiadou, S., Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs, in: Proceedings of EMNLP 2019, Seiten 4927-4938, 2019

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Liu, Z., Liu, B, Thompson, P., Yang, K, Jain, R. und Ananiadou, S., ConspEmoLLM: Conspiracy Theory Detection Using an Emotion-Based Large Language Model, arXiv, 2024

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Nguyen, N. T. H., Soto, A., Kontonatsios, G., Batista-Navarro, R. und Ananiadou, S., Constructing a Biodiversity Terminological Inventory (2017), in: PLOS ONE, 12:4(e0175277)

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Batista-Navarro, R., Zerva, C. und Ananiadou, S., Construction of a biodiversity knowledge repository using a text mining-based framework, in: Proceedings of the 3rd Annual International Symposium on Information Management and Big Data (SIMBig 2016), Seiten 22-25, 2016

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Thompson, P., Iqbal, S. A., McNaught, J. und Ananiadou, S., Construction of an annotated corpus to support biomedical information extraction (2009), in: BMC Bioinformatics, 10(349)

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Vasilakes, J., Georgiadis, P., Nguyen, N. T. H., Miwa, M. und Ananiadou, S., Contextualized Medication Event Extraction with Levitated Markers (2023), in: Journal of Biomedical Informatics(104347)

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Nguyen, N. T. H., Gabud, R. und Ananiadou, S., COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature (2019), in: Biodiversity Data Journal, 7(e29626)

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Trieu, H-L., Duong, K. N. A., Nguyen, N. T. H., Miwa, M., Takamura, H. und Ananiadou, S., Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering, in: Proceedings of the 5th Workshop on BioNLP Open Shared Tasks, Seiten 196-205, 2019

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Kim, J.-D. und Tsujii, J., Corpora and their Annotation, in: Text Mining for Biology and Biomedicine, Artech House, 2006

Almagrabi, H., Malibari, A. und McNaught, J., Corpus Analysis and Annotation for Helpful Sentences in Product Reviews (2018), in: Computer and Information Science, 11:2(76-87)

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Kim, J.-D., Ohta, T. und Tsujii, J., Corpus annotation for mining biomedical events from literature (2008), in: BMC Bioinformatics, 9:1(10)

Lapitan, F., Batista-Navarro, R. und Albacea, E., Crowdsourcing-based Annotation of Emotions in Filipino and English Tweets, in: Proceedings of the 6th Workshop on South and Southeast Asian Natural Language Processing (WSSANLP 2016), 2016

Rak, R., Batista-Navarro, R., Rowley, A., Carter, J. und Ananiadou, S., Customisable Curation Workflows in Argo, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 270-278, 2013

Thompson, P., McNaught, J. und Ananiadou, S., Customised OCR Correction for Historical Medical Text, in: Proceedings of DigitalHeritage 2015, Seiten 35 - 42, 2015

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Mu, T., Goulermas, J. Y und Ananiadou, S., Data Visualization with Structural Control of Global Cohort and Local Data Neighborhoods (2017), in: IEEE Transactions on Pattern Analysis and Machine Intelligence, 99

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Piliouras, D., Korkontzelos, I., Dowsey, A. und Ananiadou, S., Dealing with data sparsity in Drug Named Entity Recognition, in: Proceedings of IEEE International Conference on Healthcare Informatics, Philadelhia, PA, Seiten 14-21, 2013

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Miyao, Y. und Tsujii, J., Deep Linguistic Analysis for the Accurate Identification of Predicate-Argument Relations, in: Proceedings of COLING 2004, Seiten 1392-1397, 2004

Trieu, H-L., Tran, T. T., Duong, K. N. A., Nguyen, A., Miwa, M. und Ananiadou, S., DeepEventMine: End-to-end Neural Nested Event Extraction from Biomedical Texts (2020), in: Bioinformatics(btaa540)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. und Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), Seiten 103--108, 2009

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Sagae, K. und Tsujii, J., Dependency parsing and domain adaptation with LR models and parser ensembles, in: Proceedings of the CoNLL 2007 Shared Task in the Joint Conferences on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL'07 shared task), Seiten 1044-1050, 2007

Kontonatsios, G., Korkontzelos, I., Kolluru, B., Thompson, P. und Ananiadou, S., Deploying and Sharing U-Compare Workflows as Web Services (2013), in: Journal of Biomedical Semantics, 4(7)

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