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Rak, R., Batista-Navarro, R., Rowley, A., Miwa, M., Carter, J. und Ananiadou, S., NaCTeMâ€™s BioC Modules and Resources for BioCreative IV, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, Bethesda, Maryland, USA, Seiten 61-67, 2013

Ananiadou, S., Sullivan, D., Black, W.J., Levow, G., Gillespie, J., Mao, C., Pyysalo, S., Kolluru, B., Tsujii, J. und Sobral, B., Named Entity Recognition for Bacterial Type IV Secretion Systems (2011), in: PLoS ONE, 6:3(e14780)

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Trieu, H-L., Miwa, M. und Ananiadou, S., Named Entity Recognition for Cancer Immunology Research Using Distant Supervision, in: Proceedings of BioNLP 2022, Seiten 171-177, 2022

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Tsujii, J., Natural Language Processing and Computational Linguistics (2021), in: Computational Linguistics, 47:4(707-727)

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Zhang, T., Schoene, A und Ananiadou, S., Natural Language Processing Applied to Mental Illness Detection: A Narrative Review (2022), in: n p j Digital Medicine, 5(46)

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Nawaz, R., Thompson, P. und Ananiadou, S., Negated BioEvents: Analysis and Identification (2013), in: BMC Bioinformatics, 14:1(14)

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Min, E., Rong, Y, Xu, T., Bian, Y., Zhao, P., Da, L., Lin, K., Ananiadou, S. und Huang, J., Neighbour Interaction based Click-Through Rate Prediction via Graph-masked Transformer, in: Proceedings of SIGIR 2022, Seiten 353-362, 2022

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Wang, K., Stevens, R., Alachram, H., Li, Y., Soldatova, L. N., King, R. D., Ananiadou, S., Schoene, A, Li, M., Christopoulou, F., Ambite, J. L., Matthew, J., Garg, S., Hermjakob, U., Marcu, D., Sheng, E., Beissbarth, T., Wingender, E., Galstyan, A., Gao, X., Chambers, B., Pan, W., Khomtchouk, B. B., Evans, J. A. und Rzhetsky, A., NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding (2021), in: npj systems biology and applications, 7(38)

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Li, M. und Ananiadou, S., Neural Architectures for Aggregating Sequence Labels from Multiple Annotators (2022), in: Neurocomputing

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Oda, K., Kim, J.-D., Ohta, T., Okanohara, D., Matsuzaki, T., Tateisi, Y. und Tsujii, J., New challenges for text mining: Mapping between text and manually curated pathways (2008), in: BMC Bioinformatics, 9:Suppl 3(S5)

Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. und Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, Seiten 100-108, 2012

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Thompson, P., Nawaz, R., Korkontzelos, I., Black, W.J., McNaught, J. und Ananiadou, S., News Search Using Discourse Analytics, in: Proceedings of the 2013 Digital Heritage International Congress, Marseille, France, Seiten 597-604, IEEE, 2013

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Dengel, A., Etzioni, O., DeCario, N., Hoos, H., Li, F. -F., Tsujii, J. und Traverso, P., Next Big Challenges in Core AI Technology, Seiten 90-115, Springer, 2021

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Tsuruoka, Y., McNaught, J. und Ananiadou, S., Normalizing biomedical terms by minimizing ambiguity and variability (2008), in: BMC Bioinformatics, 9:Suppl 3(S2)

Hatori, J., Miyao, Y. und Tsujii, J., On Contribution of Sense Dependencies to Word Sense Disambiguation (2009), in: Information and Media Technologies, 4:4(1129--1155)

Leroi, A. M., Lambert, B. C., Mauch, M., Papadopoulou, M., Ananiadou, S., Lindberg, S. I. I. und Lindenfors, P., On Revolutions (2018), in: V-Dem Working Paper(63)

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Leroi, A. M., Lambert, B. C., Mauch, M., Papadopoulou, M., Ananiadou, S., Lindberg, S. I. I. und Lindenfors, P., On revolutions (2020), in: Palgrave Communications, 6(4)

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Tran, T. T., Le, P. und Ananiadou, S., One-shot to Weakly-Supervised Relation Classification using Language Models, in: Proceedings of the 3rd Conference on Automated Knowledge Base Construction, 2021

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Kim, J.-D., Ananiadou, S. und Tsujii, J., Ontology based Semantic Annotation for Knowledge Extraction, in: 2nd International Digital Curation Conference, 2006

Ohta, T., Pyysalo, S., Tsujii, J. und Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), Seiten 27-36, 2012

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Batista-Navarro, R., Rak, R. und Ananiadou, S., Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics (2015), in: Journal of Cheminformatics, 7:Suppl 1(S6)

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Almeida, B., Ananiadou, S., Bagnato, A., Barbero, A. B., Di Rocco, J., Di Ruscio, D., Kolovos, D. S., Korkontzelos, I., Hansen, S., Malo, P., Matragkas, N., Paige, R. F. und Vinju, J., OSSMETER: Automated Measurement and Analysis of Open Source Software, in: Proceedings of the Projects Showcase at the Software Technologies: Applications and Foundations 2015 (STAF 2015), 2015

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Nguyen, N. T. H., Kim, J.-D. und Tsujii, J., Overview of BioNLP 2011 Protein Coreference Shared Task, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 74--82, Association for Computational Linguistics, 2011

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Kim, J.-D., Pyysalo, S., Ohta, T., Bossy, R., Nguyen, N. T. H. und Tsujii, J., Overview of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 1--6, Association for Computational Linguistics, 2011

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NÃ©dellec, C., Bossy, R., Kim, J.-D., Kim, J-J., Ohta, T., Pyysalo, S. und Zweigenbaum, P., Overview of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Seiten 1--7, Association for Computational Linguistics, 2013

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