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| Ninomiya, T., Matsuzaki, T., Miyao, Y. and Tsujii, J., A log-linear model with an n-gram reference distribution for accurate HPSG parsing, in: Proceedings of the Tenth International Conference on Parsing Technologies (IWPT), Prague, Czech Republic, páginas 60--68, 2007
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| Ninomiya, T., Matsuzaki, T., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Extremely Lexicalized Models for Accurate and Fast HPSG Parsing, in: Proceedings of EMNLP 2006, páginas 155--163, 2006
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| Ninomiya, T., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Efficacy of Beam Thresholding, Unification Filtering and Hybrid Parsing in Probabilistic HPSG Parsing, in: Proceedings of IWPT 2005, páginas 103--114, 2005
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| Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Kleio: a knowledge-enriched information retrieval system for biology, in: Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval, Singapore, Singapore, páginas 787--788, ACM, 2008
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| Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. and Ananiadou, S., Mining Metabolites: Extracting the Yeast Metabolome from the Literature (2011), in: Metabolomics, 7:1(94-101)
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| Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. and Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), páginas 34--48, 2009
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| Oda, K., Kim, J.-D., Ohta, T., Okanohara, D., Matsuzaki, T., Tateisi, Y. and Tsujii, J., New challenges for text mining: Mapping between text and manually curated pathways (2008), in: BMC Bioinformatics, 9:Suppl 3(S5)
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| Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. and Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, páginas 106--107, 2009
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| Ohta, T., Matsuzaki, T., Okazaki, N., Miwa, M., Sætre, R., Pyysalo, S. and Tsujii, J., Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7)
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| Ohta, T., Miyao, Y., Ninomiya, T., Tsuruoka, Y., Yakushiji, A., Masuda, K., Takeuchi, J., Yoshida, K., Hara, T., Kim, J.-D., Tateisi, Y. and Tsujii, J., An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing, in: Proceedings of the COLING/ACL 2006 Interactive Presentation Sessions, páginas 17-20, 2006
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| Ohta, T., Pyysalo, S., Miwa, M., Kim, J.-D. and Tsujii, J., Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, páginas 19--27, Association for Computational Linguistics, 2010
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| Ohta, T., Pyysalo, S., Tsujii, J. and Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), páginas 27-36, 2012
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| Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. and Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), páginas 1402--1405, 2006
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