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| Black, W.J., Rupp, C. J., Nobata, C., McNaught, J., Tsujii, J. en Ananiadou, S., High-Precision Semantic Search by Generating and Testing Questions, in: Proceedings of the UK e-Science All Hands Meeting, 2010
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[URL]
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| Tekiner, F., Ananiadou, S., Tsuruoka, Y. en Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009
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[URL]
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| Mu, T., Wang, X., Tsujii, J. en Ananiadou, S., Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pagina's 851-859, 2010
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| Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S., Ohta, T. en Tsujii, J., Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916)
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[DOI]
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| Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. en Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pagina's 106--107, 2009
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| Kano, Y., McCrochon, L., Ananiadou, S. en Tsujii, J., Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit, in: Proceedings of the NAACL HLT Workshop on Software Engineering, Testing, and Quality Assurance for Natural Language Processing, pagina's 22--30, 2009
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| Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S. en Tsujii, J., Investigating heterogeneous protein annotations toward cross-corpora utilization (2009), in: BMC Bioinformatics, 10(403)
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| Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. en Ananiadou, S., Kleio: a knowledge-enriched information retrieval system for biology, in: Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval, Singapore, Singapore, pagina's 787--788, ACM, 2008
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| Sun, X., Matsuzaki, T., Okanohara, D. en Tsujii, J., Latent Variable Perceptron Algorithm for Structured Classification, in: Proceedings of International Joint Conferences on Artificial Intelligence (IJCAI), pagina's 1236--1242, 2009
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[URL]
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| Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. en Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), pagina's 1402--1405, 2006
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| Wang, Y., Fan, X., Chen, L., Chang, E. I-C., Ananiadou, S., Tsujii, J. en Xu, Y., Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries (2019), in: BMC Bioinformatics, 20(430)
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| Ohta, T., Matsuzaki, T., Okazaki, N., Miwa, M., Sætre, R., Pyysalo, S. en Tsujii, J., Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7)
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