All publications sorted by journal and type


Publications of type Inproceedings


2008

Nguyen, N. T. H., Kim, J.-D. and Tsujii, J., Challenges in Pronoun Resolution System for Biomedical Text, in: Proceedings of the 6th International Conference on Language Resources and Evaluation (LREC 2008), pages 2408--2412, 2008
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Piao, S., McNaught, J. and Ananiadou, S., Clustering Related Terms with Definitions, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pages 2013-2019, European Language Resources Association (ELRA), 2008
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Splendiani, A., Piao, S., Sasaki, Y., Ananiadou, S., McNaught, J. and Burgun, A, Compositional Enrichment of Bio-Ontologies, in: Proceedings of 11th Annual Bio-Ontologies Meeting, at the Intelligent Systems for Molecular Biology 2008 Conference (ISMB-2008), 2008
Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., Connecting Text Mining and Pathways using the PathText Resource, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pages 1736-1740, European Language Resources Association (ELRA), 2008
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Sasaki, Y., Thompson, P., Cotter, P., McNaught, J. and Ananiadou, S., Event Frame Extraction Based on a Gene Regulation Corpus, in: Proceedings of the 22nd International Conference on Computational Linguistics (Coling 2008), pages 761--768, Coling 2008 Organizing Committee, 2008
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Kim, J.-D., Ohta, T., Oda, K. and Tsujii, J., From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature, in: Proceedings of the 6th Asia Pacific Bioinformatics Conference, pages 165-176, Imperial College Press, 2008
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Sasaki, Y., Tsuruoka, Y., McNaught, J. and Ananiadou, S., How to Make the Most of NE Dictionaries in Statistical NER, in: Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing (BioNLP 2008), pages 63--70, Association for Computational Linguistics, 2008
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Hirohata, K., Okazaki, N., Ananiadou, S. and Ishizuka, M., Identifying Sections in Scientific Abstracts using Conditional Random Fields, in: Proceedings of the 3rd International Joint Conference on Natural Language Processing (IJCNLP 2008), pages 381-388, 2008
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Nobata, C., Cotter, P., Okazaki, N., Rea, B., Sasaki, Y., Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Kleio: a knowledge-enriched information retrieval system for biology, in: Proceedings of the 31st annual international ACM SIGIR conference on Research and development in information retrieval, Singapore, Singapore, pages 787--788, ACM, 2008
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Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., PathText: Text Mining Tools Integrated with Biological Pathway, in: Genomes to Systems Conference 2008 Handbook, pages 65, The Consortium for Post-Genome Science, 2008
Kano, Y., Nguyen, N. T. H., Sætre, R., Fukamachi, K., Yoshida, K., Miyao, Y., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., Sharable type system design for tool inter-operability and combinatorial comparison, in: Proceedings of the First International Conference on Global Interoperability for Language Resources (ICGL), pages 122--129, 2008
Sætre, R., Sagae, K. and Tsujii, J., Syntactic features for protein-protein interaction extraction, in: Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), pages 6.1-6.14, CEUR Workshop Proceedings (CEUR-WS.org), 2008
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Kano, Y., Nguyen, N. T. H., Sætre, R., Yoshida, K., Fukamachi, K., Miyao, Y., Tsuruoka, Y., Ananiadou, S. and Tsujii, J., Towards Data And Goal Oriented Analysis: Tool Inter-Operability And Combinatorial Comparison, in: Proceedings of the 3rd International Joint Conference on Natural Language Processing (IJCNLP-2008), pages 859-864, 2008
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Pyysalo, S., Sætre, R., Tsujii, J. and Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pages 149--152, 2008
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2007

Okanohara, D. and Tsujii, J., A discriminative language model with pseudo-negative samples, in: Proceedings of the 45th Annual Meeting of the Association of Computational Linguistics (ACL 2007), pages 73--80, Association for Computational Linguistics, 2007
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Ninomiya, T., Matsuzaki, T., Miyao, Y. and Tsujii, J., A log-linear model with an n-gram reference distribution for accurate HPSG parsing, in: Proceedings of the Tenth International Conference on Parsing Technologies (IWPT), Prague, Czech Republic, pages 60--68, 2007
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Yoshida, K., Tsuruoka, Y., Miyao, Y. and Tsujii, J., Ambiguous Part-of-Speech Tagging for Improving Accuracy and Domain Portability of Syntactic Parsers, in: Proceedings of the Twentieth International Joint Conference on Artificial Intelligence (IJCAI-07), pages 1783-1788, 2007
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Hahn, U., Buyko, E., Tomanek, K., Piao, S., McNaught, J., Tsuruoka, Y. and Ananiadou, S., An Annotation Type System for a Data-Driven NLP Pipeline, in: Proceedings of the Linguistic Annotation Workshop, pages 33--40, Association for Computational Linguistics, 2007
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Frantzi, K. and Ananiadou, S., C-value for Authorship Identification, in: Proceedings of the 8th Conference on Forensic Linguistics, Language and Law, International Association of Forensic Linguistics, 2007
Sagae, K. and Tsujii, J., Dependency parsing and domain adaptation with LR models and parser ensembles, in: Proceedings of the CoNLL 2007 Shared Task in the Joint Conferences on Empirical Methods in Natural Language Processing and Computational Natural Language Learning (EMNLP-CoNLL'07 shared task), pages 1044-1050, 2007
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Matsuzaki, T., Miyao, Y. and Tsujii, J., Efficient HPSG Parsing with Supertagging and CFG-filtering, in: Proceedings of the Twentieth International Joint Conference on Artificial Intelligence (IJCAI-07), pages 1671-1676, 2007
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Hara, T., Miyao, Y. and Tsujii, J., Evaluating Impact of Re-training a Lexical Disambiguation Model on Domain Adaptation of an HPSG Parser, in: Proceedings of the Tenth International Conference on Parsing Technologies (IWPT 2007), pages 11--22, 2007
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