Publications by Riza Theresa B. Batista-Navarro
Papers by Riza Theresa B. Batista-Navarro at NaCTeM, newest first. All publications
2023 | 2018 | 2017 | 2016 | 2015 | 2014 | 2013 | 2012 | 2011 | 2010
52 publications
2023
- , Argument mining as a multi-hop generative machine reading comprehension task, in: Findings of the Association for Computational Linguistics: EMNLP 2023, pages 10846–10858, 2023 [DOI] [URL] [Pure]
- , Global information-aware argument mining based on a top-down multi-turn QA model, in: Information Processing & Management, 2023 [DOI] [URL] [Pure]
- , Entity Coreference and Co-occurrence Aware Argument Mining from Biomedical Literature, in: Proceedings of the 4th Workshop on Computational Approaches to Discourse (CODI 2023), pages 54–60, 2023 [DOI] [URL] [Pure]
2018
- , Annotation and Detection of Drug Effects in Text for Pharmacovigilance, in: Journal of Cheminformatics, 2018 [DOI] [URL] [Pure]
- , LitPathExplorer: A Confidence-based Visual Text Analytics Tool for Exploring Literature-Enriched Pathway Models, in: Bioinformatics, pages 1389–1397, 2018 [DOI] [Pure]
- , Identification of Research Hypotheses and New Knowledge from Scientific Literature, in: BMC Medical Informatics and Decision Making, 18(46), 2018 [DOI] [URL]
2017
- , biochem4j: integrated and extensible biochemical knowledge through graph databases, in: PLoS ONE, pages 1–14, 2017 [DOI] [URL] [Pure]
- , SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data, in: Wellcome Open Research, 2017 [DOI] [URL] [Pure]
- , Using uncertainty to link and rank evidence from biomedical literature for model curation, in: Bioinformatics, 2017 [DOI] [URL] [Pure]
- , Constructing a biodiversity terminological inventory, in: PLoS ONE, pages 1–23, 2017 [DOI] [URL] [Pure]
- , A Text Mining-Based Framework for Constructing an RDF-Compliant Biodiversity Knowledge Repository, in: Communications in Computer and Information Science, pages 30–42, 2017 [DOI] [URL] [Pure]
2016
- , BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID, in: Database: the journal of biological databases and curation, 2016 [DOI] [Pure]
- , Overview of the interactive task in BioCreative V, in: Database, 2016 [DOI] [Pure]
- , A text mining framework for accelerating the semantic curation of literature, in: Research and Advanced Technology for Digital Libraries :, pages 459–462, 2016 [DOI] [URL] [Pure]
- , Text Mining Workflows for Indexing Archives with Automatically Extracted Semantic Metadata, in: Research and Advanced Technology for Digital Libraries - 20th International Conference on Theory and Practice of Digital Libraries, TPDL 2016, , 8/09/16, pages 471–473, 2016 [DOI] [URL] [Pure]
- , Argo: Enabling the development of bespoke workflows and services for disease annotation, in: Database: The Journal of Biological Databases and Curation, 2016 [DOI] [URL] [Pure]
- , Text mining the history of medicine, in: P L o S One, 2016 [DOI] [URL] [Pure]
- , Construction of a biodiversity knowledge repository using a text mining-based framework, in: Proceedings of the 3rd Annual International Symposium on Information Management and Big Data (SIMBig 2016), pages 22-25, 2016 [URL]
- , Crowdsourcing-based Annotation of Emotions in Filipino and English Tweets, in: Proceedings of the 6th Workshop on South and Southeast Asian Natural Language Processing (WSSANLP 2016), 2016
- , Facilitating and promoting web annotation with Argo, in: Proceedings of I Annotate 2016, 2016 [Pure]
- , Learning to recognise named entities in tweets by exploiting weakly labelled data, 2016 [URL] [Pure]
2015
- , Using text mining techniques to extract phenotypic information from the PhenoCHF corpus, in: B M C Medical Informatics and Decision Making, 2015 [DOI] [URL] [Pure]
- , Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics, in: Journal of Cheminformatics, 2015 [DOI] [URL] [Pure]
- , Adapting ChER for the recognition of chemical mentions in patents, in: Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, pages 149–153, 2015 [URL] [Pure]
- , Augmenting the Medical Subject Headings vocabulary with semantically rich variants to improve disease mention normalisation, in: Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, pages 311–316, 2015 [URL] [Pure]
- , Bridging text-mined biomolecular events to pathway models using approximate subgraph matching techniques, in: Proceedings of the 16th International Conference on Systems Biology, Singapore, 2015 [Pure]
- , Development of bespoke machine learning and biocuration workflows in a BioC-supporting text mining workbench., in: Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, pages 51–56, 2015 [URL] [Pure]
- , Mining the biomedical literature, in: Healthcare Data Analytics, pages 251–308, 2015 [URL] [Pure]
- , Semi-automatic curation of chronic obstructive pulmonary disease phenotypes using Argo., in: Proceedings of the Fifth BioCreative Challenge Evaluation Workshop, pages 406–408, 2015 [URL] [Pure]
- , Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows, in: Journal of Biomedical Semantics, 2015 [DOI] [Pure]
- , Unlocking knowledge in biodiversity legacy literature through automatic semantic metadata extraction., in: Proceedings of the TDWG 2015 Annual Conference, 2015 [Pure]
2014
- , Text Mining-assisted Biocuration Workflows in Argo, in: Database, pages 1–14, 2014 [DOI] [URL] [Pure]
- , Interoperability and Customisation of Annotation Schemata in Argo, in: Proceedings of the Ninth International Conference on Language Resources and Evaluation (LREC'14), pages 3837–3842, 2014 [URL] [Pure]
- , A Strategy for Annotating Clinical Records with Phenotypic Information relating to the Chronic Obstructive Pulmonary Disease, in: Proceedings of the Phenotype day at ISMB 2014, pages 1–8, 2014 [Pure]
- , BioC interoperability track overview, in: Database: The Journal of Biological Databases and Curation, 2014, 2014 [DOI] [URL]
- , Enriching the legacy literature with OCR corrections and text-mined semantic metadata., in: Proceedings of the TDWG 2014 Annual Conference, 2014 [URL] [Pure]
- , Processing Biological Literature with Customizable Web Services Supporting Interoperable Formats, in: Database, 2014 [DOI] [URL] [Pure]
2013
- , Chemistry-specific Features and Heuristics for Developing a CRF-based Chemical Named Entity Recogniser, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, pages 55–59, 2013 [URL] [Pure]
- , Customisable Curation Workflows in Argo, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, pages 270–278, 2013 [Pure]
- , NaCTeM CTD Web Services, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, pages 85–89, 2013 [Pure]
- , NaCTeM’s BioC Modules and Resources for BioCreative IV, in: Proceedings of the Fourth BioCreative Challenge Evaluation Workshop, pages 61–67, 2013 [Pure]
- , Extending an interoperable platform to facilitate the creation of multilingual and multimodal NLP applications, in: Proceedings of the System Demonstration Session at The 51st Annual Meeting of the Association for Computational Linguistics, pages 43–48, 2013 [URL] [PDF] [Pure]
- , Towards a Better Understanding of Discourse: Integrating Multiple Discourse Annotation Perspectives Using UIMA, in: Proceedings of the 7th Linguistic Annotation Workshop and Interoperability with Discourse, pages 79–88, 2013 [URL] [PDF] [Pure]
- , Facilitating the analysis of discourse phenomena in an interoperable NLP platform, in: Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pages 559–571, 2013 [DOI] [URL] [Pure]
- , Supporting Discourse Phenomena in an Interoperable NLP Framework, in: host publication, 2013 [Pure]
2012
- , Analysing Entity Type Variation across Biomedical Subdomains, in: Proceedings of the Third Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM 2012), pages 1–7, 2012 [URL] [Pure]
- , What's in a Name? Entity Type Variation across Two Biomedical Subdomains, in: Proceedings of the Student Research Workshop at the 13th Conference of the European Chapter of the Association for Computational Linguistics, pages 38–45, 2012 [URL] [Pure]
2011
- , Adapting the Cluster Ranking Supervised Model to Resolve Coreferences in the Drug Literature, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), pages 71–77, 2011 [Pure]
- , Detecting experimental techniques and selecting relevant documents for protein-protein interactions from biomedical literature, in: BMC Bioinformatics, 2011 [DOI] [URL] [Pure]
- , Building a coreference-annotated corpus from the domain of biochemistry, in: Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, ACL-HLT 2011, pages 83–91, 2011 [URL] [Pure]
- , Discovering Potential Drugs by Extracting Biological Activities of Natural Products, in: Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing 2011, 2011 [URL] [Pure]
2010
- , NaCTeM Systems for BioCreative III PPI Tasks, in: Proceedings of the BioCreative III Workshop, pages 142–147, 2010 [URL] [Pure]