Ananiadou, S. - NaCTeM Publications

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First name(s):	S.
Last name(s):	Ananiadou

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Wang, X., Rak, R., Restificar, A., Nobata, C., Rupp, C. J., Batista-Navarro, R., Nawaz, R. and Ananiadou, S., NaCTeM Systems for BioCreative III PPI Tasks, in: Proceedings of the BioCreative III Workshop, pages 142-147, 2010

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Kemper, B., Matsuzaki, T., Matsuoka, Y., Tsuruoka, Y., Kitano, H., Ananiadou, S. and Tsujii, J., PathText: A Text Mining Integrator for Biological Pathway Visualizations (2010), in: Bioinformatics, 26:12(i374-i381)

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Mu, T. and Ananiadou, S., Proximity-based graph embeddings for multi-label classification, in: Proceedings of the International Conference on Knowledge Discovery and Information Retrieval (KDIR 2010), 2010

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Ananiadou, S., Thompson, P., Thomas, J., Mu, T., Oliver, S., Rickinson, M., Sasaki, Y., Weissenbacher, D. and McNaught, J., Supporting the Education Evidence Portal via Text Mining (2010), in: Philosophical Transactions of the Royal Society A, 368:1925(3829-3844)

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Kano, Y., Dobson, P., Nakanishi, M., Tsujii, J. and Ananiadou, S., Text Mining Meets Workflow: Linking U-Compare with Taverna (2010), in: Bioinformatics, 26:19(2486-2487)

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Sasaki, Y., McNaught, J. and Ananiadou, S., The value of an in-domain lexicon in genomics qa (2010), in: Journal of bioinformatics and computational biology, 8:1(147--161)

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Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. and Ananiadou, S., Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., pages 132--140, 2010

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Kano, Y., Dorado, R., McCrochon, L., Ananiadou, S. and Tsujii, J., U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pages 428--434, 2010

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McEntyre, J. R., Ananiadou, S., Andrews, S., Black, W.J., Boulderstone, R., Buttery, P., Chaplin, D., Chevuru, S., Cobley, N., Coleman, L., Davey, P., Gupta, B., Haji-Gholam, L., Hawkins, C., Horne, A., Hubbard, S. J., Kim, J. -H., Lewin, I., Lyte, V., MacIntyre, R., Mansoor, S., Mason, L., McNaught, J., Newbold, E., Nobata, C., Ong, E., Pillai, S., Rebholz-Schuhmann, D., Rosie, H., Rowbotham, R., Rupp, C. J., Stoehr, P. and Vaughan, P., UKPMC: a full text article resource for the life sciences (2010), in: Nucleic Acids Research, 39:Suppl. 1(D58-D65)

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BarrÃ³n-CedeÃ±o, A., Sierra, G. E., Drouin, P. and Ananiadou, S., An Improved Automatic Term Recognition method for Spanish, in: Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009), Mexico City, Mexico, pages 125--136, Springer, 2009

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Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Biological Event Recognition with Textual Induction, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), pages 91--96, 2009

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Venturi, G., Montemagni, S., Marchi, S., Sasaki, Y., Thompson, P., McNaught, J. and Ananiadou, S., Bootstrapping a Verb Lexicon for Biomedical Information Extraction, in: Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009), pages 137--148, Springer, 2009

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Wang, X., Tsujii, J. and Ananiadou, S., Classifying Relations for Biomedical Named Entity Disambiguation, in: Procedings of the Conference on Empirical Methods in Natural Language Processing (EMNLP'09), pages 1513--1522, 2009

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Sasaki, Y., Rea, B. and Ananiadou, S., Clinical Text Classification under the Open and Closed Topic Assumptions (2009), in: International Journal on Data Mining and Bioinformatics (IJDMB), 3:3(299--313)

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Matsuoka, Y., Ghosh, S., Kikuchi, N., SÃ¦tre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. and Kitano, H., Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, pages 139-140, Stanford University, 2009

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Thompson, P., Iqbal, S. A., McNaught, J. and Ananiadou, S., Construction of an annotated corpus to support biomedical information extraction (2009), in: BMC Bioinformatics, 10(349)

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Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Fast Full Parsing by Linear-Chain Conditional Random Fields, in: Proceedings of the 12th Conference of European Chapter of the Association for Computational Linguistics (EACL-09), pages 790--798, 2009

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Tekiner, F., Ananiadou, S., Tsuruoka, Y. and Tsujii, J., Highly Scalable Text Mining Parallel Tagging Application, in: Proceedings of ICSSCW2009, Famgusta, Cyprus, 2009

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Piao, S., Rea, B., McNaught, J. and Ananiadou, S., Improving Full Text Search With Text Mining Tools, in: Proceedings of the 14th International Conference on Applications of Natural Language to Information Systems, pages 301-302, 2009

Kano, Y., McCrochon, L., Ananiadou, S. and Tsujii, J., Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit, in: Proceedings of the NAACL HLT Workshop on Software Engineering, Testing, and Quality Assurance for Natural Language Processing, pages 22--30, 2009

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Nobata, C., Sasaki, Y., Okazaki, N., Rupp, C. J., Tsujii, J. and Ananiadou, S., Semantic Search on Digital Document Repositories based on Text Mining Results, in: International Conferences on Digital Libraries and the Semantic Web 2009 (ICSD2009), pages 34--48, 2009

Piao, S., Tsuruoka, Y. and Ananiadou, S., Sentiment Analysis with Knowledge Resource and NLP Tools (2009), in: The International Journal of Interdisciplinary Social Sciences, 4:5(17--28)

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Tsuruoka, Y., Tsujii, J. and Ananiadou, S., Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative Penalty, in: ACL-IJCNLP 2009, pages 477--485, 2009

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Ananiadou, S., Weissenbacher, D., Rea, B., Pieri, E., Lin, Y., Vis, F., Procter, R. and Halfpenny, P., Supporting Frame Analysis using Text Mining, in: Proceedings of the 5th International Conference on e-Social Science, 2009

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Ananiadou, S., Okazaki, N., Procter, R., Rea, B. and Thomas, J., Supporting Systematic Reviews using Text Mining (2009), in: Social Science Computer Review, 27:4(509-523)

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