Publication list - NaCTeM Publications

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Tsujii, J., Natural Language Processing and Computational Linguistics (2021), in: Computational Linguistics, 47:4(707-727)

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Zhang, T., Schoene, A and Ananiadou, S., Natural Language Processing Applied to Mental Illness Detection: A Narrative Review (2022), in: n p j Digital Medicine, 5(46)

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Nawaz, R., Thompson, P. and Ananiadou, S., Negated BioEvents: Analysis and Identification (2013), in: BMC Bioinformatics, 14:1(14)

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Min, E., Rong, Y, Xu, T., Bian, Y., Zhao, Y., Da, L., Lin, K., Ananiadou, S. and Huang, J., Neighbour Interaction based Click-Through Rate Prediction via Graph-masked Transformer, in: Proceedings of SIGIR 2022, pages 353-362, 2022

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Wang, K., Stevens, R., Alachram, H., Li, Y., Soldatova, L. N., King, R. D., Ananiadou, S., Schoene, A, Li, M., Christopoulou, F., Ambite, J. L., Matthew, J., Garg, S., Hermjakob, U., Marcu, D., Sheng, E., Beissbarth, T., Wingender, E., Galstyan, A., Gao, X., Chambers, B., Pan, W., Khomtchouk, B. B., Evans, J. A. and Rzhetsky, A., NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding (2021), in: npj systems biology and applications, 7(38)

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Li, M. and Ananiadou, S., Neural Architectures for Aggregating Sequence Labels from Multiple Annotators (2022), in: Neurocomputing

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Yu, Z. and Ananiadou, S., Neuron-Level Knowledge Attribution in Large Language Models, in: Proceedings of the 2024 Conference on Empirical Methods in Natural Language Processing, pages 3267–3280, 2024

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Oda, K., Kim, J.-D., Ohta, T., Okanohara, D., Matsuzaki, T., Tateisi, Y. and Tsujii, J., New challenges for text mining: Mapping between text and manually curated pathways (2008), in: BMC Bioinformatics, 9:Suppl 3(S5)

Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. and Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, pages 100-108, 2012

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Thompson, P., Nawaz, R., Korkontzelos, I., Black, W.J., McNaught, J. and Ananiadou, S., News Search Using Discourse Analytics, in: Proceedings of the 2013 Digital Heritage International Congress, Marseille, France, pages 597-604, IEEE, 2013

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Dengel, A., Etzioni, O., DeCario, N., Hoos, H., Li, F. -F., Tsujii, J. and Traverso, P., Next Big Challenges in Core AI Technology, pages 90-115, Springer, 2021

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Hu, G., Qin, K., Yuan, C., Peng, M., Lopez-Lira, A., Wang, B., Ananiadou, S., Huang, J. and Xie, Q., No Language is an Island: Unifying Chinese and English in Financial Large Language Models, Instruction Data, and Benchmarks, arXiv, 2024

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Tsuruoka, Y., McNaught, J. and Ananiadou, S., Normalizing biomedical terms by minimizing ambiguity and variability (2008), in: BMC Bioinformatics, 9:Suppl 3(S2)

Hatori, J., Miyao, Y. and Tsujii, J., On Contribution of Sense Dependencies to Word Sense Disambiguation (2009), in: Information and Media Technologies, 4:4(1129--1155)

Leroi, A. M., Lambert, B. C., Mauch, M., Papadopoulou, M., Ananiadou, S., Lindberg, S. I. I. and Lindenfors, P., On Revolutions (2018), in: V-Dem Working Paper(63)

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Leroi, A. M., Lambert, B. C., Mauch, M., Papadopoulou, M., Ananiadou, S., Lindberg, S. I. I. and Lindenfors, P., On revolutions (2020), in: Palgrave Communications, 6(4)

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Tran, T. T., Le, P. and Ananiadou, S., One-shot to Weakly-Supervised Relation Classification using Language Models, in: Proceedings of the 3rd Conference on Automated Knowledge Base Construction, 2021

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Kim, J.-D., Ananiadou, S. and Tsujii, J., Ontology based Semantic Annotation for Knowledge Extraction, in: 2nd International Digital Curation Conference, 2006

Ohta, T., Pyysalo, S., Tsujii, J. and Ananiadou, S., Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pages 27-36, 2012

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Xie, Q., Li, D., Xiao, M., Jiang, Y., Xiang, R., Zhang, X., Chen, Z., He, Y., Han, W., Yang, Y., Chen, S., Zhang, Y., Shen, L., Kim, D., Liu, Z., Luo, Z., Yu, Y., Cao, Y., Deng, Z., Yao, Z., Li, H., Feng, D., Dai, Y., Somasundaram, V., Lu, P., Zhao, Y., Long, Y., Xiong, G., Smith, K., Yu, H., Lai, Y., Peng, M., Nie, J., Suchow, J., Liu, X. -Y., Wang, B., Lopez-Lira, A., Huang, J. and Ananiadou, S., Open-FinLLMs: Open Multimodal Large Language Models for Financial Applications, arXiv, 2024

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Batista-Navarro, R., Rak, R. and Ananiadou, S., Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics (2015), in: Journal of Cheminformatics, 7:Suppl 1(S6)

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Almeida, B., Ananiadou, S., Bagnato, A., Barbero, A. B., Di Rocco, J., Di Ruscio, D., Kolovos, D. S., Korkontzelos, I., Hansen, S., Malo, P., Matragkas, N., Paige, R. F. and Vinju, J., OSSMETER: Automated Measurement and Analysis of Open Source Software, in: Proceedings of the Projects Showcase at the Software Technologies: Applications and Foundations 2015 (STAF 2015), 2015

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Nguyen, N. T. H., Kim, J.-D. and Tsujii, J., Overview of BioNLP 2011 Protein Coreference Shared Task, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 74--82, Association for Computational Linguistics, 2011

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Kim, J.-D., Pyysalo, S., Ohta, T., Bossy, R., Nguyen, N. T. H. and Tsujii, J., Overview of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 1--6, Association for Computational Linguistics, 2011

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NÃ©dellec, C., Bossy, R., Kim, J.-D., Kim, J-J., Ohta, T., Pyysalo, S. and Zweigenbaum, P., Overview of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, pages 1--7, Association for Computational Linguistics, 2013

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