Ananiadou, S. - NaCTeM Publications

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Voornamen:	S.
Achternamen:	Ananiadou

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Kolluru, B., Nakjang, S., Rupp, C. J., Hirt, R. P, Wipat, A. en Ananiadou, S., Automatic extraction of microorganisms and their habitats from free text using text-mining workflows, in: Proceedings of the International Symposium on Integrative Bioinformatics, 2011, 2011

Kano, Y., Nguyen, N. T. H., SÃ¦tre, R., Fukamachi, K., Yoshida, K., Miyao, Y., Tsuruoka, Y., Ananiadou, S. en Tsujii, J., Sharable type system design for tool inter-operability and combinatorial comparison, in: Proceedings of the First International Conference on Global Interoperability for Language Resources (ICGL), pagina's 122--129, 2008

Soldatova, L. N., Kolluru, B., King, R. D., Qi, D. en Ananiadou, S., An ontology-based disambiguation of terms, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011

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Batista-Navarro, R. en Ananiadou, S., Discovering Potential Drugs by Extracting Biological Activities of Natural Products, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011

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Kocbek, S., SÃ¦tre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. en Tsujii, J., Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from Pubmed publications, in: Proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011

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Kano, Y., Miwa, M., Cohen, K. B., Hunter, L., Ananiadou, S. en Tsujii, J., U-Compare: a modular NLP workflow construction and evaluation system (2011), in: IBM Journal of Research and Development, 55:3(11:1 - 11:10)

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McEntyre, J. R., Ananiadou, S., Andrews, S., Black, W.J., Boulderstone, R., Buttery, P., Chaplin, D., Chevuru, S., Cobley, N., Coleman, L., Davey, P., Gupta, B., Haji-Gholam, L., Hawkins, C., Horne, A., Hubbard, S. J., Kim, J. -H., Lewin, I., Lyte, V., MacIntyre, R., Mansoor, S., Mason, L., McNaught, J., Newbold, E., Nobata, C., Ong, E., Pillai, S., Rebholz-Schuhmann, D., Rosie, H., Rowbotham, R., Rupp, C. J., Stoehr, P. en Vaughan, P., UKPMC: a full text article resource for the life sciences (2010), in: Nucleic Acids Research, 39:Suppl. 1(D58-D65)

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Ananiadou, S., Thompson, P. en Nawaz, R., Improving Search Through Event-based Biomedical Text Mining, in: Proceedings of the 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop, 2010

Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. en Ananiadou, S., Mining Metabolites: Extracting the Yeast Metabolome from the Literature (2011), in: Metabolomics, 7:1(94-101)

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Black, W.J., Rupp, C. J., Nobata, C., McNaught, J., Tsujii, J. en Ananiadou, S., High-Precision Semantic Search by Generating and Testing Questions, in: Proceedings of the UK e-Science All Hands Meeting, 2010

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Mu, T. en Ananiadou, S., Proximity-based graph embeddings for multi-label classification, in: Proceedings of the International Conference on Knowledge Discovery and Information Retrieval (KDIR 2010), 2010

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Rupp, C. J., Thompson, P., Black, W.J., McNaught, J. en Ananiadou, S., A Specialised Verb Lexicon as the Basis of Fact Extraction in the Biomedical Domain, in: Proceedings of Interdisciplinary Workshop on Verbs: The Identification and Representation of Verb Features (Verb 2010), 2010

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Nawaz, R., Thompson, P. en Ananiadou, S., Event Interpretation: A Step towards Event-Centred Text Mining, in: Proceedings of the 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop, 2010

Nawaz, R., Thompson, P. en Ananiadou, S., Evaluating a meta-knowledge annotation scheme for bio-events, in: Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, pagina's 69--77, 2010

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Kano, Y., Dobson, P., Nakanishi, M., Tsujii, J. en Ananiadou, S., Text Mining Meets Workflow: Linking U-Compare with Taverna (2010), in: Bioinformatics, 26:19(2486-2487)

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Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. en Ananiadou, S., Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., pagina's 132--140, 2010

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Mu, T., Wang, X., Tsujii, J. en Ananiadou, S., Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pagina's 851-859, 2010

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Sasaki, Y., Wang, X. en Ananiadou, S., Extracting Secondary Bio-Event Arguments with Extraction Constraints (2011), in: Computational Intelligence, 27:4(702-721)

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Ananiadou, S., Pyysalo, S., Tsujii, J. en Kell, D. B., Event extraction for systems biology by text mining the literature (2010), in: Trends in Biotechnology, 28:7(381-390)

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Kemper, B., Matsuzaki, T., Matsuoka, Y., Tsuruoka, Y., Kitano, H., Ananiadou, S. en Tsujii, J., PathText: A Text Mining Integrator for Biological Pathway Visualizations (2010), in: Bioinformatics, 26:12(i374-i381)

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Ananiadou, S., Thompson, P., Thomas, J., Mu, T., Oliver, S., Rickinson, M., Sasaki, Y., Weissenbacher, D. en McNaught, J., Supporting the Education Evidence Portal via Text Mining (2010), in: Philosophical Transactions of the Royal Society A, 368:1925(3829-3844)

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Wang, X. en Ananiadou, S., A Task-Oriented Extension of the Chinese MeSH Concepts Hierarchy, in: Proceedings of the Second Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM), LREC 2010, pagina's 23--30, 2010

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Okazaki, N., Ananiadou, S. en Tsujii, J., Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation (2010), in: Bioinformatics, 26:9(1246-1253)

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Kano, Y., Dorado, R., McCrochon, L., Ananiadou, S. en Tsujii, J., U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), pagina's 428--434, 2010

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Sasaki, Y., McNaught, J. en Ananiadou, S., The value of an in-domain lexicon in genomics qa (2010), in: Journal of bioinformatics and computational biology, 8:1(147--161)

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