Ananiadou, S. - NaCTeM Publications

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Vorname(n):	S.
Nachname(n):	Ananiadou

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Kolluru, B., Nakjang, S., Rupp, C. J., Hirt, R. P, Wipat, A. und Ananiadou, S., Automatic extraction of microorganisms and their habitats from free text using text-mining workflows, in: Proceedings of the International Symposium on Integrative Bioinformatics, 2011, 2011

Kano, Y., Nguyen, N. T. H., SÃ¦tre, R., Fukamachi, K., Yoshida, K., Miyao, Y., Tsuruoka, Y., Ananiadou, S. und Tsujii, J., Sharable type system design for tool inter-operability and combinatorial comparison, in: Proceedings of the First International Conference on Global Interoperability for Language Resources (ICGL), Seiten 122--129, 2008

Soldatova, L. N., Kolluru, B., King, R. D., Qi, D. und Ananiadou, S., An ontology-based disambiguation of terms, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011

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Batista-Navarro, R. und Ananiadou, S., Discovering Potential Drugs by Extracting Biological Activities of Natural Products, in: Proceedings of the Workshop on Mining the Pharmacogenomics Literature, Pacific Symopsium on Biocomputing, 2011

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Kocbek, S., SÃ¦tre, R., Stiglic, G., Kim, J.-D., Pernek, I., Tsuruoka, Y., Kokol, P., Ananiadou, S. und Tsujii, J., Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from Pubmed publications, in: Proceedings of the 1st IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS), 2011

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Kano, Y., Miwa, M., Cohen, K. B., Hunter, L., Ananiadou, S. und Tsujii, J., U-Compare: a modular NLP workflow construction and evaluation system (2011), in: IBM Journal of Research and Development, 55:3(11:1 - 11:10)

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McEntyre, J. R., Ananiadou, S., Andrews, S., Black, W.J., Boulderstone, R., Buttery, P., Chaplin, D., Chevuru, S., Cobley, N., Coleman, L., Davey, P., Gupta, B., Haji-Gholam, L., Hawkins, C., Horne, A., Hubbard, S. J., Kim, J. -H., Lewin, I., Lyte, V., MacIntyre, R., Mansoor, S., Mason, L., McNaught, J., Newbold, E., Nobata, C., Ong, E., Pillai, S., Rebholz-Schuhmann, D., Rosie, H., Rowbotham, R., Rupp, C. J., Stoehr, P. und Vaughan, P., UKPMC: a full text article resource for the life sciences (2010), in: Nucleic Acids Research, 39:Suppl. 1(D58-D65)

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Ananiadou, S., Thompson, P. und Nawaz, R., Improving Search Through Event-based Biomedical Text Mining, in: Proceedings of the 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop, 2010

Nobata, C., Dobson, P., Iqbal, S. A., Mendes, P., Tsujii, J., Kell, D. B. und Ananiadou, S., Mining Metabolites: Extracting the Yeast Metabolome from the Literature (2011), in: Metabolomics, 7:1(94-101)

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Black, W.J., Rupp, C. J., Nobata, C., McNaught, J., Tsujii, J. und Ananiadou, S., High-Precision Semantic Search by Generating and Testing Questions, in: Proceedings of the UK e-Science All Hands Meeting, 2010

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Mu, T. und Ananiadou, S., Proximity-based graph embeddings for multi-label classification, in: Proceedings of the International Conference on Knowledge Discovery and Information Retrieval (KDIR 2010), 2010

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Rupp, C. J., Thompson, P., Black, W.J., McNaught, J. und Ananiadou, S., A Specialised Verb Lexicon as the Basis of Fact Extraction in the Biomedical Domain, in: Proceedings of Interdisciplinary Workshop on Verbs: The Identification and Representation of Verb Features (Verb 2010), 2010

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Nawaz, R., Thompson, P. und Ananiadou, S., Event Interpretation: A Step towards Event-Centred Text Mining, in: Proceedings of the 1st Automated Motif Discovery in Cultural Heritage and Scientific Communication Texts (AMICUS) workshop, 2010

Nawaz, R., Thompson, P. und Ananiadou, S., Evaluating a meta-knowledge annotation scheme for bio-events, in: Proceedings of the Workshop on Negation and Speculation in Natural Language Processing, Seiten 69--77, 2010

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Kano, Y., Dobson, P., Nakanishi, M., Tsujii, J. und Ananiadou, S., Text Mining Meets Workflow: Linking U-Compare with Taverna (2010), in: Bioinformatics, 26:19(2486-2487)

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Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. und Ananiadou, S., Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., Seiten 132--140, 2010

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Mu, T., Wang, X., Tsujii, J. und Ananiadou, S., Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), Seiten 851-859, 2010

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Sasaki, Y., Wang, X. und Ananiadou, S., Extracting Secondary Bio-Event Arguments with Extraction Constraints (2011), in: Computational Intelligence, 27:4(702-721)

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Ananiadou, S., Pyysalo, S., Tsujii, J. und Kell, D. B., Event extraction for systems biology by text mining the literature (2010), in: Trends in Biotechnology, 28:7(381-390)

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Kemper, B., Matsuzaki, T., Matsuoka, Y., Tsuruoka, Y., Kitano, H., Ananiadou, S. und Tsujii, J., PathText: A Text Mining Integrator for Biological Pathway Visualizations (2010), in: Bioinformatics, 26:12(i374-i381)

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Ananiadou, S., Thompson, P., Thomas, J., Mu, T., Oliver, S., Rickinson, M., Sasaki, Y., Weissenbacher, D. und McNaught, J., Supporting the Education Evidence Portal via Text Mining (2010), in: Philosophical Transactions of the Royal Society A, 368:1925(3829-3844)

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Wang, X. und Ananiadou, S., A Task-Oriented Extension of the Chinese MeSH Concepts Hierarchy, in: Proceedings of the Second Workshop on Building and Evaluating Resources for Biomedical Text Mining (BioTxtM), LREC 2010, Seiten 23--30, 2010

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Okazaki, N., Ananiadou, S. und Tsujii, J., Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation (2010), in: Bioinformatics, 26:9(1246-1253)

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Kano, Y., Dorado, R., McCrochon, L., Ananiadou, S. und Tsujii, J., U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library, in: Proceedings of the Seventh International Conference on Language Resources and Evaluation (LREC 2010), Seiten 428--434, 2010

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Sasaki, Y., McNaught, J. und Ananiadou, S., The value of an in-domain lexicon in genomics qa (2010), in: Journal of bioinformatics and computational biology, 8:1(147--161)

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