Publicaties van Pyysalo, S. gesorteerd op eerste auteur
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Event extraction for systems biology by text mining the literature (2010), in: Trends in Biotechnology, 28:7(381-390) | , , en ,
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Named Entity Recognition for Bacterial Type IV Secretion Systems (2011), in: PLoS ONE, 6:3(e14780) | , , , , , , , , en ,
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Complex event extraction at PubMed scale (2010), in: Bioinformatics, 26:12(i382-i390) | , , , en ,
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PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations, in: Proceedings of BioNLP 2012, pagina's 82-90, 2012 | , , , , , , en ,
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U-Compare bio-event meta-service: compatible BioNLP event extraction services (2011), in: BMC Bioinformatics, 12(481) | , , , , , , , , , , , , , , , , , , , , , , , , , , en ,
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Extracting Bio-Molecular Events From Literature—The BioNLP’09 Shared Task (2011), in: Computational Intelligence, 27:4(513-540) | , , , en ,
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Overview of BioNLP'09 Shared Task on Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 1--9, 2009 | , , , en ,
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Overview of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 1--6, Association for Computational Linguistics, 2011 | , , , , en ,
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BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2) | , , en ,
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A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text (2013), in: Bioinformatics, 29:13(i44-i52) | , , , , , en ,
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Evaluating Dependency Representation for Event Extraction, in: Proceedings of the 23rd International Conference on Computational Linguistics (COLING 2010), pagina's 779-787, 2010 | , , en ,
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A Comparative Study of Syntactic Parsers for Event Extraction, in: Proceedings of BioNLP 2010, ACL., pagina's 37--45, 2010 | , , en ,
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Wide coverage biomedical event extraction using multiple partially overlapping corpora (2013), in: BMC Bioinformatics, 14:175 | , , en ,
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Overview of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, pagina's 1--7, Association for Computational Linguistics, 2013 | , , , , , en ,
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Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pagina's 106--107, 2009 | , , , en ,
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Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7) | , , , , , en ,
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Pathway Curation Support as an Information Extraction Task, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011 | , , en ,
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A re-evaluation of biomedical named entity-term relations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(917--928) | , , en ,
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Event Extraction for Post-Translational Modifications, in: Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, pagina's 19--27, Association for Computational Linguistics, 2010 | , , , en ,
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Event Extraction for DNA Methylation, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010 | , , en ,
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Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, pagina's 67-75, Association for Computational Linguistics, 2013 | , , , , , , en ,
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From Pathways to Biomolecular Events: Opportunities and Challenges, in: Proceedings of the BioNLP 2011 Workshop, pagina's 105--113, Association for Computational Linguistics, 2011 | , en ,
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Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 16--25, Association for Computational Linguistics, 2011 | , en ,
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Open-domain Anatomical Entity Mention Detection, in: Proceedings of the ACL Workshop on Detecting Stucture in Scholarly Discourse (DSSD), pagina's 27-36, 2012 | , , en ,
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