Dear guest, welcome to this publication database. As an anonymous user, you will probably not have edit rights. Also, the collapse status of the topic tree will not be persistent. If you like to have these and other options enabled, you might ask Admin for a login account.
| This site is powered by Aigaion - A PHP/Web based management system for shared and annotated bibliographies. For more information visit www.aigaion.de. |
|
Publications of Pyysalo, S. sorted by first author
P
| and , Anatomical Entity Mention Recognition at Literature Scale (2014), in: Bioinformatics, 30:6(868-875) |
[DOI] [URL] |
| , , , and , Distributional Semantics Resources for Biomedical Text Processing, in: Proceedings of LBM 2013, pages 39-44, 2013 |
[URL] |
| , and , Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, pages 58-66, Association for Computational Linguistics, 2013 |
[URL] |
| , and , Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011 |
[URL] |
| , , , , , , and , Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., pages 132--140, 2010 |
[URL] |
| , , and , Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, pages 1--9, 2009 |
[URL] |
| , , , , and , Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581) |
[DOI] [URL] |
| , , and , Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, pages 114--123, Association for Computational Linguistics, 2011 |
[URL] |
| , , , , , , , and , Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2) |
[DOI] [URL] |
| , , , , , , , and , Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2) |
[DOI] [URL] |
| , , , , , , , and , Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 26--35, Association for Computational Linguistics, 2011 |
[URL] |
| , and , Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, pages 83--88, Association for Computational Linguistics, 2011 |
[URL] |
| , and , An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010 |
[URL] |
| , , and , Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), pages 149--152, 2008 |
[URL] |
| , , , and , New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, pages 100-108, 2012 |
[URL] |
S
| , , , , and , BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, pages 109--116, Turku Centre for Computer Science (TUCS), 2008 |
|
| , , and , Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26) |
[DOI] [URL] |
| , , and , Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011) |
| , , , and , Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, pages 47-56, 2012 |
[URL] |
| , , , , and , brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, pages 102-107, Association for Computational Linguistics, 2012 |
[URL] |
| , and , SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation, in: Proceedings of the BioNLP 2011 Workshop, pages 136-145, Association for Computational Linguistics, 2011 |
[URL] |
| , , , , and , BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pages 112--120, Association for Computational Linguistics, 2011 |
[URL] |
V
| , , , , , , , , , and , Large-scale event extraction from literature with multi-level gene normalization (2013), in: PLOS ONE, 8:4(e55814) |
[DOI] [URL] |
W
| , , , , and , Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916) |
[DOI] |
| , , , , and , Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pages 103--108, 2009 |
[URL] |