Pyysalo, S. - NaCTeM Publications - Aigaion 2.0

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Vorname(n):	S.
Nachname(n):	Pyysalo

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Pyysalo, S. und Ananiadou, S., Anatomical Entity Mention Recognition at Literature Scale (2014), in: Bioinformatics, 30:6(868-875)

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Pyysalo, S., Ginter, F., Moen, H., Salakoski, T. und Ananiadou, S., Distributional Semantics Resources for Biomedical Text Processing, in: Proceedings of LBM 2013, Seiten 39-44, 2013

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Pyysalo, S., Ohta, T. und Ananiadou, S., Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013, in: Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, Seiten 58-66, Association for Computational Linguistics, 2013

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Pyysalo, S., Ohta, T. und Ananiadou, S., Anatomical Entity Recognition with Open Biomedical Ontologies, in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011), 2011

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Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. und Ananiadou, S., Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., Seiten 132--140, 2010

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Pyysalo, S., Ohta, T., Kim, J.-D. und Tsujii, J., Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, Seiten 1--9, 2009

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Pyysalo, S., Ohta, T., Miwa, M., Cho, H. -C., Tsujii, J. und Ananiadou, S., Event extraction across multiple levels of biological organization (2012), in: Bioinformatics, 28:18(i575-i581)

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Pyysalo, S., Ohta, T., Miwa, M. und Tsujii, J., Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, Seiten 114--123, Association for Computational Linguistics, 2011

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Pyysalo, S., Ohta, T., Rak, R., Rowley, A., Chun, H.-W., Jung, S. -J., Choi, S. -P., Tsujii, J. und Ananiadou, S., Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013 (2015), in: BMC BioInformatics, 16(Suppl 10):Suppl 10(S2)

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 (2012), in: BMC Bioinformatics, 13:Suppl. 11(S2)

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Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. und Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 26--35, Association for Computational Linguistics, 2011

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Pyysalo, S., Ohta, T. und Tsujii, J., Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011, in: Proceedings of theBioNLP Shared Task 2011 Workshop, Seiten 83--88, Association for Computational Linguistics, 2011

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Pyysalo, S., Ohta, T. und Tsujii, J., An Analysis of Gene/Protein Associations at PubMed Scale, in: Proceedings of the fourth International Symposium for Semantic Mining in Biomedicine (SMBM 2010), 2010

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Pyysalo, S., SÃ¦tre, R., Tsujii, J. und Salakoski, T., Why Biomedical Relation Extraction Results are Incomparable and What to do about it, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Seiten 149--152, 2008

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Pyysalo, S., Stenetorp, P., Ohta, T., Kim, J.-D. und Ananiadou, S., New Resources and Perspectives for Biomedical Event Extraction, in: Proceedings of BioNLP 2012, Seiten 100-108, 2012

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Sasaki, Y., Montemagni, S., Pezik, P., Rebholz-Schuhmann, D., McNaught, J. und Ananiadou, S., BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, Seiten 109--116, Turku Centre for Computer Science (TUCS), 2008

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Stenetorp, P., Pyysalo, S., Ananiadou, S. und Tsujii, J., Generalising semantic category disambiguation with large lexical resources for fun and profit (2014), in: Journal of Biomedical Semantics, 5(26)

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Stenetorp, P., Pyysalo, S., Ananiadou, S. und Tsujii, J., Almost Total Recall: Semantic Category Disambiguation Using Large Lexical Resources and Approximate String Matching (2011), in: Proceedings of the Fourth International Symposium on Languages in Biology and Medicine (LBM 2011)

Stenetorp, P., Pyysalo, S., Ohta, T., Ananiadou, S. und Tsujii, J., Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, Seiten 47-56, 2012

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Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. und Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 102-107, Association for Computational Linguistics, 2012

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Stenetorp, P., Pyysalo, S. und Tsujii, J., SimSem: Fast Approximate String Matching in Relation to Semantic Category Disambiguation, in: Proceedings of the BioNLP 2011 Workshop, Seiten 136-145, Association for Computational Linguistics, 2011

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Stenetorp, P., TopiÄ‡, G., Pyysalo, S., Ohta, T., Kim, J.-D. und Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 112--120, Association for Computational Linguistics, 2011

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Van Landeghem, S., BjÃ¶rne, J., Wei, C-. H, Hakala, K., Pyysalo, S., Ananiadou, S., Kao, H. -Y., Lu, Z., Salakoski, T., Van de Peer, Y. und Ginter, F., Large-scale event extraction from literature with multi-level gene normalization (2013), in: PLOS ONE, 8:4(e55814)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. und Tsujii, J., Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916)

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Wang, Y., Kim, J.-D., SÃ¦tre, R., Pyysalo, S., Ohta, T. und Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), Seiten 103--108, 2009

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