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Kontonatsios, G., Korkontzelos, I., Tsujii, J. en Ananiadou, S., Combining String and Context Similarity for Bilingual Term Alignment from Comparable Corpora, in: Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing (EMNLP), Doha, Qatar, pagina's 1701-1712, Association for Computational Linguistics, 2014
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Matsuoka, Y., Ghosh, S., Kikuchi, N., Sætre, R., Kemper, B., Okazaki, N., Ananiadou, S., Tsujii, J. en Kitano, H., Community Platform for Pathway Model Building, in: 10th International Conference on Systems Biology, pagina's 139-140, Stanford University, 2009
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Yu, K., Miyao, Y., Matsuzaki, T., Wang, X., Zhang, Y., Uchimoto, K. en Tsujii, J., Comparison of Chinese Treebanks for Corpus-oriented HPSG Grammar Development (2010), in: Journal of Natural Language Processing (Special Issue on Empirical Methods for Asian Language Processing)
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Björne, J., Ginter, F., Pyysalo, S., Tsujii, J. en Salakoski, T., Complex event extraction at PubMed scale (2010), in: Bioinformatics, 26:12(i382-i390)
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Sætre, R., Kemper, B., Oda, K., Okazaki, N., Matsuoka, Y., Kikuchi, N., Kitano, H., Tsuruoka, Y., Ananiadou, S. en Tsujii, J., Connecting Text Mining and Pathways using the PathText Resource, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), pagina's 1736-1740, European Language Resources Association (ELRA), 2008
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Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S., Ohta, T. en Tsujii, J., Demystifying protein annotations: toward increasing the compatibility of different corpora, in: Proceedings of the 3rd International Symposium on Languages in Biology and Medicine (LBM 2009), pagina's 103--108, 2009
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Taura, K., Matsuzaki, T., Miwa, M., Kamoshida, Y., Yokoyama, D., Dun, N., Shibata, T., Jun, C. S. en Tsujii, J., Design and Implementation of GXP Make -- A Workflow System Based on Make, in: Proceedings of the 2010 IEEE Sixth International Conference on e-Science, pagina's 214--221, IEEE Computer Society, 2010
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Tsuruoka, Y., Tateisi, Y., Kim, J.-D., Ohta, T., McNaught, J., Ananiadou, S. en Tsujii, J., Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, pagina's 382--392, Springer-Verlag, 2005
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Tsuruoka, Y., Miwa, M., Hamamoto, K., Tsujii, J. en Ananiadou, S., Discovering and visualizing indirect associations between biomedical concepts (2011), in: Bioinformatics, 27:13(i111-i119)
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Sato, M., Brockmeier, A. J., Kontonatsios, G., Mu, T., Goulermas, J. Y, Tsujii, J. en Ananiadou, S., Distributed Document and Phrase Co-embeddings for Descriptive Clustering, in: Proceedings of EACL, pagina's 991-1001, 2017
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Andrade, D., Matsuzaki, T. en Tsujii, J., Effective use of dependency structure for bilingual lexicon creation, in: Proceedings of the 12th international conference on Computational linguistics and intelligent text processing (CICLing'11) - Volume Part II, Tokyo, Japan, pagina's 80--92, Springer-Verlag, 2011
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Ninomiya, T., Tsuruoka, Y., Miyao, Y. en Tsujii, J., Efficacy of Beam Thresholding, Unification Filtering and Hybrid Parsing in Probabilistic HPSG Parsing, in: Proceedings of IWPT 2005, pagina's 103--114, 2005
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Yano, K., Luo, Z., Huang, J., Xie, Q., Asada, M., Yuan, C., Yang, K, Miwa, M., Ananiadou, S. en Tsujii, J., ELAINE-medLLM: Lightweight English Japanese Chinese Trilingual Large Language Model for Bio-medical Domain, in: Proceedings of the 31st International Conference on Computational Linguistics (COLING 2025), In Press
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