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| Pyysalo, S., Ohta, T., Rak, R., Sullivan, D., Mao, C., Wang, C., Sobral, B., Tsujii, J. en Ananiadou, S., Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 26--35, Association for Computational Linguistics, 2011
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| Kim, J.-D., Pyysalo, S., Ohta, T., Bossy, R., Nguyen, N. T. H. en Tsujii, J., Overview of BioNLP Shared Task 2011, in: Proceedings of the BioNLP Shared Task 2011 Workshop, pagina's 1--6, Association for Computational Linguistics, 2011
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| Pyysalo, S., Ohta, T., Miwa, M. en Tsujii, J., Towards Exhaustive Event Extraction for Protein Modifications, in: Proceedings of the BioNLP 2011 Workshop, pagina's 114--123, Association for Computational Linguistics, 2011
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| Ohta, T., Matsuzaki, T., Okazaki, N., Miwa, M., Sætre, R., Pyysalo, S. en Tsujii, J., Medie and Info-pubmed: 2010 update (2010), in: BMC Bioinformatics, 11:Suppl 5(P7)
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| Wang, Y., Kim, J.-D., Sætre, R., Pyysalo, S., Ohta, T. en Tsujii, J., Improving the Inter-corpora Compatibility for Protein Annotations (2010), in: Journal of Bioinformatics and Computational Biology (JBCB), 8:5(901-916)
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| Pyysalo, S., Ohta, T., Cho, H. -C., Sullivan, D., Mao, C., Sobral, B., Tsujii, J. en Ananiadou, S., Towards Event Extraction from Full Texts on Infectious Diseases, in: Proceedings of BioNLP 2010, ACL., pagina's 132--140, 2010
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| Kim, J.-D., Ohta, T., Pyysalo, S., Kano, Y. en Tsujii, J., Overview of BioNLP'09 Shared Task on Event Extraction, in: Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, pagina's 1--9, 2009
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| Ohta, T., Kim, J.-D., Pyysalo, S., Wang, Y. en Tsujii, J., Incorporating GENETAG-style annotation to GENIA corpus, in: Proceedings of BioNLP 2009 Workshop, pagina's 106--107, 2009
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| Pyysalo, S., Ohta, T., Kim, J.-D. en Tsujii, J., Static Relations: a Piece in the Biomedical Information Extraction Puzzle, in: Proceedings of BioNLP 2009 Workshop, pagina's 1--9, 2009
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| Kim, J.-D., Ohta, T., Tsuruoka, Y., Tateisi, Y. en Collier, N., Introduction to the Bio-Entity Recognition Task at JNLPBA, in: Proceedings of the International Workshop on Natural Language Processing in Biomedicine and its Applications (JNLPBA-04), pagina's 70--75, 2004
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| Chun, H.-W., Ohta, T., Kim, J.-D. en Tsujii, J., Building Patterns for Biomedical Event Extraction, in: Proceedings of the 15th International conference on Genome Informatics (GIW), pagina's 163--164, 2004
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| Tsuruoka, Y., Tateisi, Y., Kim, J.-D., Ohta, T., McNaught, J., Ananiadou, S. en Tsujii, J., Developing a Robust Part-of-Speech Tagger for Biomedical Text, in: Advances in Informatics - 10th Panhellenic Conference on Informatics, pagina's 382--392, Springer-Verlag, 2005
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| Yakushiji, A., Miyao, Y., Ohta, T., Tateisi, Y. en Tsujii, J., Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information Extraction, in: Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing (EMNLP), pagina's 284--292, 2006
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| Ohta, T., Miyao, Y., Ninomiya, T., Tsuruoka, Y., Yakushiji, A., Masuda, K., Takeuchi, J., Yoshida, K., Hara, T., Kim, J.-D., Tateisi, Y. en Tsujii, J., An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing, in: Proceedings of the COLING/ACL 2006 Interactive Presentation Sessions, pagina's 17-20, 2006
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| Ohta, T., Tateisi, Y., Kim, J.-D., Yakushiji, A. en Tsujii, J., Linguistic and Biological Annotations of Biological Interaction Events, in: Proceedings of The Fifth International Conference on Language Resources and Evaluation (LREC 2006), pagina's 1402--1405, 2006
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| Miyao, Y., Ohta, T., Masuda, K., Tsuruoka, Y., Yoshida, K., Ninomiya, T. en Tsujii, J., Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive Textbases, in: Proceedings of COLING-ACL 2006, pagina's 1017--1024, 2006
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| Oda, K., Kim, J.-D., Ohta, T., Okanohara, D., Matsuzaki, T., Tateisi, Y. en Tsujii, J., New challenges for text mining: Mapping between text and manually curated pathways (2008), in: BMC Bioinformatics, 9:Suppl 3(S5)
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| Kim, J.-D., Ohta, T., Oda, K. en Tsujii, J., From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature, in: Proceedings of the 6th Asia Pacific Bioinformatics Conference, pagina's 165-176, Imperial College Press, 2008
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