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Xu, Y., Chen, L., Wei, J., Ananiadou, S., Fan, Y., Qian, Y., Chang, E. I-C. und Tsujii, J., Bilingual term alignment from comparable corpora in English discharge summary and Chinese discharge summary (2015), in: BMC Bioinformatics, 16(149)

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Riedel, S., SÃ¦tre, R., Chun, H.-W., Takagi, T. und Tsujii, J., Bio-Molecular Event Extraction with Markov Logic (2011), in: Computational Intelligence, 27:4(558-582)

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Comeau, Donald C., Batista-Navarro, R., Dai, Hong-Jie, Islamaj DoÄŸan, Rezarta, Jimeno Yepes, Antonio, Khare, Ritu, Lu, Zhiyong, Marques, Hernani, Mattingly, Carolyn J., Neves, M., Peng, Yifan, Rak, R., Rinaldi, F., Tsai, Richard Tzong-Han, Verspoor, K., Wiegers, Thomas C., Wu, Cathy H. und Wilbur, W., BioC interoperability track overview (2014), in: Database: The Journal of Biological Databases and Curation, 2014

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MihÄƒilÄƒ, C., Ohta, T., Pyysalo, S. und Ananiadou, S., BioCause: Annotating and Analysing Causality in the Biomedical Domain (2013), in: BMC Bioinformatics, 14:1(2)

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Swainston, N., Batista-Navarro, R., Carbonel, P., Dobson, P., Dunstan, M., Jervis, A., Vinaixa, M., Williams, A., Ananiadou, S., Faulon, J. L., Mendes, P., Kell, D. B., Scrutton, N. und Breitling, R., biochem4j: integrated and extensible biochemical knowledge through graph databases (2017), in: PLOS ONE, 12:7(e0179130)

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Goldsack, T., Luo, Z., Xie, Q., Scarton, C., Shardlow, M., Ananiadou, S. und Lin, C., BioLaySumm 2023 Shared Task: Lay Summarisation of Biomedical Research Articles, in: Proceedings of BioNLP 2023, Seiten 468–477, 2023

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Sasaki, Y., Montemagni, S., Pezik, P., Rebholz-Schuhmann, D., McNaught, J. und Ananiadou, S., BioLexicon: A Lexical Resource for the Biology Domain, in: Proceedings of the Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, Seiten 109--116, Turku Centre for Computer Science (TUCS), 2008

Rebholz-Schuhmann, D., Pezik, P., Lee, V., Kim, J-J., del Gratta, R., Sasaki, Y., McNaught, J., Montemagni, S., Monachini, M., Calzolari, N. und Ananiadou, S., BioLexicon: Towards a Reference Terminological Resource in the Biomedical Domain, in: Proceedings of the of the 16th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB-2008), 2008

Sasaki, Y., Thompson, P., McNaught, J. und Ananiadou, S., Biological Event Recognition with Textual Induction, in: Proceedings of 3rd International Symposium on Languages in Biology and Medicine (LBM-2009), Seiten 91--96, 2009

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Wang, X., Thompson, P. und Ananiadou, S., Biomedical Chinese-English CLIR Using an Extended CMeSH Resource to Expand Queries, in: Proceedings of the Eighth International Conference on Language Resources and Evaluation (LREC 2012), Seiten 1148-1155, 2012

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Yakushiji, A., Miyao, Y., Tateisi, Y. und Tsujii, J., Biomedical Information Extraction with Predicate-Argument Structure Patterns, in: Proceedings of the First International Symposium on Semantic Mining in Biomedicine (SMBM), Seiten 60--69, 2005

Stenetorp, P., TopiÄ‡, G., Pyysalo, S., Ohta, T., Kim, J.-D. und Tsujii, J., BioNLP Shared Task 2011: Supporting Resources, in: Proceedings of the BioNLP Shared Task 2011 Workshop, Seiten 112--120, Association for Computational Linguistics, 2011

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Yamada, T., Kamata, R., Ishinohachi, K., Shojima, N., Ananiadou, S., Noma, H., Yamauchi, T. und Kadowaki, T., Biosimilar Versus Originator Insulins: Systematic review and meta-analysis (2018), in: Diabetes, Obesity and Metabolism

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Trieu, H-L., Miwa, M. und Ananiadou, S., BioVAE: a pre-trained latent variable language model for biomedical text mining (2022), 38:3(872-874)

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Miwa, M., Thompson, P. und Ananiadou, S., Boosting automatic event extraction from the literature using domain adaptation and coreference resolution (2012), in: Bioinformatics, 28:13(1759-1765)

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Korkontzelos, I., Piliouras, D., Dowsey, A. und Ananiadou, S., Boosting Drug Named Entity Recognition using an Aggregate Classifier (2015), in: Artificial Intelligence in Medicine (AIIM), Special issue of ICHI 2013 conference

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Venturi, G., Montemagni, S., Marchi, S., Sasaki, Y., Thompson, P., McNaught, J. und Ananiadou, S., Bootstrapping a Verb Lexicon for Biomedical Information Extraction, in: Proceedings of the 10th International Conference on Intelligent Text Processing and Computational Linguistics (CICLing 2009), Seiten 137--148, Springer, 2009

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Piao, S., Buyko, E., Tsuruoka, Y., Tomanek, K., Kim, J.-D., McNaught, J., Hahn, U., Su, J. und Ananiadou, S., BOOTStrep Annotation Scheme: Encoding Information for Text Mining, in: Proceedings of the 4th Corpus Linguistics Conference (CL2007), 2007

Stenetorp, P., Pyysalo, S., TopiÄ‡, G., Ohta, T., Ananiadou, S. und Tsujii, J., brat: a Web-based Tool for NLP-Assisted Text Annotation, in: Proceedings of the Demonstrations at the 13th Conference of the European Chapter of the Association for Computational Linguistics, Avignon, France, Seiten 102-107, Association for Computational Linguistics, 2012

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Uematsu, S., Kim, J.-D. und Tsujii, J., Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics, in: Proceedings of BioNLP 2009 Workshop, Seiten 162--170, 2009

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Stenetorp, P., Pyysalo, S., Ohta, T., Ananiadou, S. und Tsujii, J., Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far, in: Proceedings of ExProM 2012, Seiten 47-56, 2012

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Thompson, P., Cotter, P., McNaught, J., Ananiadou, S., Montemagni, S., Trabucco, A. und Venturi, G., Building a Bio-Event Annotated Corpus for the Acquisition of Semantic Frames from Biomedical Corpora, in: Proceedings of the Sixth International Conference on Language Resources and Evaluation (LREC 2008), Seiten 2159--2166, European Language Resources Association (ELRA), 2008

Batista-Navarro, R. und Ananiadou, S., Building a coreference-annotated corpus from the domain of biochemistry, in: Proceedings of BioNLP 2011, Seiten 83-91, 2011

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Okazaki, N., Ananiadou, S. und Tsujii, J., Building a High Quality Sense Inventory for Improved Abbreviation Disambiguation (2010), in: Bioinformatics, 26:9(1246-1253)

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